DBNascent | Samples

SRZ930653 Sample ID 1160

**Data sources**
Paper identifier	Kaikkonen2013remodeling
SRP accession	SRP026695
GEO accession	GSE48759
Samples	SRR930653
	SRR930654

**Technical details**
QC score	4
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	True
Control/Experimental	control
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	28 Mb
Stranded gene read counts	TXT file	904 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	927 Kb
dREG bidirectional regions	BED file	284 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	peritoneal macrophage
Clone/Individual
Strain	C57BL/6
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	serum starvation (0.5% FBS)	-14 hr	0 hr	14 hr

**Extended notes**
Pipeline info and software versions
Sample notes	Replicate information unclear
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	4
Sample NRO score	1
Raw read length	34
Read depth after trimming	6,528,653
Duplication proportion	0.28742
Proportion reads mapped	0.7693
Exon/intron ratio	2.88031
Unique read proportion	0.67407

**Bidirectionals**
Total # Tfit bidirectionals	10976
# Promoter Tfit bidirectionals	4776
# Intronic Tfit bidirectionals	3594
# Intergenic Tfit bidirectionals	1461
Total # dREG bidirectionals	6595
# Promoter dREG bidirectionals	3404
# Intronic dREG bidirectionals	1615
# Intergenic dREG bidirectionals	900
Part of Tfit master merge?	True
Part of dREG master merge?	True