DBNascent | Samples

SRZ930655 Sample ID 1161

**Data sources**
Paper identifier	Kaikkonen2013remodeling
SRP	SRP026695
Samples	SRR930655
	SRR930656

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	True
Control/Experimental	control
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	39 Mb
Stranded gene read counts	TXT file	908 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	436 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	peritoneal macrophage
Clone/Individual
Strain	C57BL/6
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	serum starvation (0.5% FBS)	-14 hr	0 hr	14 hr

**Extended notes**
Pipeline info and software versions
Sample notes	Replicate information unclear
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	1
Raw read length	34
Read depth after trimming	12,497,027
Duplication proportion	0.39004
Proportion reads mapped	0.7013
Exon/intron ratio	2.62269
Unique read proportion	0.60328

**Bidirectionals**
Total # Tfit bidirectionals	15231
# Promoter Tfit bidirectionals	5877
# Intronic Tfit bidirectionals	4958
# Intergenic Tfit bidirectionals	2606
Total # dREG bidirectionals	10137
# Promoter dREG bidirectionals	4670
# Intronic dREG bidirectionals	2658
# Intergenic dREG bidirectionals	1853
Part of Tfit master merge?	True
Part of dREG master merge?	True