DBNascent | Samples

SRZ930657 Sample ID 1162

**Data sources**
Paper identifier	Kaikkonen2013remodeling
SRP accession	SRP026695
GEO accession	GSE48759
Samples	SRR930657
	SRR930658

**Technical details**
QC score	4
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	True
Control/Experimental	control
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	25 Mb
Stranded gene read counts	TXT file	903 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	383 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	peritoneal macrophage
Clone/Individual
Strain	C57BL/6
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	serum starvation (0.5% FBS)	-14 hr	0 hr	14 hr

**Extended notes**
Pipeline info and software versions
Sample notes	Replicate information unclear
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	4
Sample NRO score	2
Raw read length	34
Read depth after trimming	6,103,414
Duplication proportion	0.35741
Proportion reads mapped	0.7581
Exon/intron ratio	3.62679
Unique read proportion	0.60087

**Bidirectionals**
Total # Tfit bidirectionals	12948
# Promoter Tfit bidirectionals	5692
# Intronic Tfit bidirectionals	4072
# Intergenic Tfit bidirectionals	1948
Total # dREG bidirectionals	8912
# Promoter dREG bidirectionals	4776
# Intronic dREG bidirectionals	2072
# Intergenic dREG bidirectionals	1262
Part of Tfit master merge?	True
Part of dREG master merge?	True