DBNascent | Samples

SRZ930665 Sample ID 1165

**Data sources**
Paper identifier	Kaikkonen2013remodeling
SRP accession	SRP026695
GEO accession	GSE48759
Samples	SRR930665
	SRR930666

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	True
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	36 Mb
Stranded gene read counts	TXT file	907 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	360 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	peritoneal macrophage
Clone/Individual
Strain	C57BL/6
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	Kdo2-Lipid A (100 ng/mL)	-12 hr	0 hr	12 hr
treatment	serum starvation (0.5% FBS)	-26 hr	0 hr	26 hr

**Extended notes**
Pipeline info and software versions
Sample notes	Replicate information unclear
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	1
Raw read length	34
Read depth after trimming	12,762,409
Duplication proportion	0.51555
Proportion reads mapped	0.6959
Exon/intron ratio	2.89931
Unique read proportion	0.47796

**Bidirectionals**
Total # Tfit bidirectionals	12237
# Promoter Tfit bidirectionals	4806
# Intronic Tfit bidirectionals	3925
# Intergenic Tfit bidirectionals	2056
Total # dREG bidirectionals	8358
# Promoter dREG bidirectionals	4070
# Intronic dREG bidirectionals	2220
# Intergenic dREG bidirectionals	1366
Part of Tfit master merge?	True
Part of dREG master merge?	True