DBNascent | Samples

SRZ930667 Sample ID 1166

**Data sources**
Paper identifier	Kaikkonen2013remodeling
SRP	SRP026695
Samples	SRR930667
	SRR930668

**Technical details**
QC score	4
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	True
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	26 Mb
Stranded gene read counts	TXT file	902 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	395 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	peritoneal macrophage
Clone/Individual
Strain	C57BL/6
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	Kdo2-Lipid A (100 ng/mL)	-24 hr	0 hr	1 day
treatment	serum starvation (0.5% FBS)	-38 hr	0 hr	38 hr

**Extended notes**
Pipeline info and software versions
Sample notes	Replicate information unclear
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	4
Sample NRO score	2
Raw read length	34
Read depth after trimming	6,087,558
Duplication proportion	0.32471
Proportion reads mapped	0.7587
Exon/intron ratio	3.76303
Unique read proportion	0.63428

**Bidirectionals**
Total # Tfit bidirectionals	12392
# Promoter Tfit bidirectionals	5394
# Intronic Tfit bidirectionals	3790
# Intergenic Tfit bidirectionals	2030
Total # dREG bidirectionals	9177
# Promoter dREG bidirectionals	4847
# Intronic dREG bidirectionals	2183
# Intergenic dREG bidirectionals	1414
Part of Tfit master merge?	True
Part of dREG master merge?	True