DBNascent | Samples

SRZ930677 Sample ID 1167

**Data sources**
Paper identifier	Kaikkonen2013remodeling
SRP	SRP026695
Samples	SRR930677
	SRR930678

**Technical details**
QC score	3
Replicate	3
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	True
Control/Experimental	control
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	82 Mb
Stranded gene read counts	TXT file	921 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	829 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	peritoneal macrophage
Clone/Individual
Strain	C57BL/6
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	serum starvation (0.5% FBS)	-14 hr	0 hr	14 hr

**Extended notes**
Pipeline info and software versions
Sample notes	Replicate information unclear
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	48
Read depth after trimming	44,423,326
Duplication proportion	0.77125
Proportion reads mapped	0.8749
Exon/intron ratio	3.44941
Unique read proportion	0.53473

**Bidirectionals**
Total # Tfit bidirectionals	23943
# Promoter Tfit bidirectionals	9728
# Intronic Tfit bidirectionals	7445
# Intergenic Tfit bidirectionals	4807
Total # dREG bidirectionals	19116
# Promoter dREG bidirectionals	6822
# Intronic dREG bidirectionals	6305
# Intergenic dREG bidirectionals	4324
Part of Tfit master merge?	True
Part of dREG master merge?	True