DBNascent | Samples

SRZ930691 Sample ID 1169

**Data sources**
Paper identifier	Kaikkonen2013remodeling
SRP accession	SRP026695
GEO accession	GSE48759
Samples	SRR930691
	SRR930692
	SRR930693
	SRR930694

**Technical details**
QC score	3
Replicate	2
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	30 Mb
Stranded gene read counts	TXT file	909 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	550 Kb
dREG bidirectional regions	BED file	260 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	peritoneal macrophage
Clone/Individual
Strain	C57BL/6
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	DMSO	-2 hr	0 hr	2 hr
treatment	serum starvation (0.5% FBS)	-15 hr	0 hr	15 hr

**Extended notes**
Pipeline info and software versions
Sample notes	Replicate information unclear
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	1
Raw read length	51
Read depth after trimming	14,431,972
Duplication proportion	0.69886
Proportion reads mapped	0.7728
Exon/intron ratio	2.66111
Unique read proportion	0.3216

**Bidirectionals**
Total # Tfit bidirectionals	6457
# Promoter Tfit bidirectionals	2819
# Intronic Tfit bidirectionals	1987
# Intergenic Tfit bidirectionals	758
Total # dREG bidirectionals	6045
# Promoter dREG bidirectionals	3376
# Intronic dREG bidirectionals	1352
# Intergenic dREG bidirectionals	680
Part of Tfit master merge?	True
Part of dREG master merge?	True