DBNascent | Samples

SRZ930707 Sample ID 1172

**Data sources**
Paper identifier	Kaikkonen2013remodeling
SRP	SRP026695
Samples	SRR930707
	SRR930708
	SRR930709
	SRR930710
	SRR930711

**Technical details**
QC score	4
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	18 Mb
Stranded gene read counts	TXT file	897 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	86 Kb
dREG bidirectional regions	BED file	35 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	peritoneal macrophage
Clone/Individual
Strain	C57BL/6
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	Kdo2-Lipid A (100 ng/mL)	-1 hr	0 hr	1 hr
treatment	serum starvation (0.5% FBS)	-15 hr	0 hr	15 hr
treatment	triptolide (1 microM)	-2 hr	0 hr	2 hr

**Extended notes**
Pipeline info and software versions
Sample notes	Replicate information unclear
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	4
Sample NRO score	3
Raw read length	51
Read depth after trimming	17,980,970
Duplication proportion	0.8936
Proportion reads mapped	0.6794
Exon/intron ratio	2.65455
Unique read proportion	0.12205

**Bidirectionals**
Total # Tfit bidirectionals	996
# Promoter Tfit bidirectionals	140
# Intronic Tfit bidirectionals	360
# Intergenic Tfit bidirectionals	129
Total # dREG bidirectionals	820
# Promoter dREG bidirectionals	146
# Intronic dREG bidirectionals	303
# Intergenic dREG bidirectionals	253
Part of Tfit master merge?	True
Part of dREG master merge?	True