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SRZ935093 Sample ID 1108
| Paper identifier | Jonkers2014genome |
| SRP accession | SRP027411 |
| GEO accession | GSE48895 |
| Samples | SRR935093 |
| SRR935094 |
| QC score | 2 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | ligation |
| Spike-in | A. thaliana |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | True |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 118 Mb |
| Stranded gene read counts | TXT file | 927 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 3 Mb |
| dREG bidirectional regions | BED file | 1 Mb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | cell line |
| Cell type | ESC |
| Clone/Individual | V6.5 |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 2 |
| Sample NRO score | 1 |
| Raw read length | 50 |
| Read depth after trimming | 78,097,811 |
| Duplication proportion | 0.63569 |
| Proportion reads mapped | 0.6581 |
| Exon/intron ratio | 2.41399 |
| Unique read proportion | 0.45584 |
| Total # Tfit bidirectionals | 38861 |
| # Promoter Tfit bidirectionals | 10311 |
| # Intronic Tfit bidirectionals | 13208 |
| # Intergenic Tfit bidirectionals | 11328 |
| Total # dREG bidirectionals | 33305 |
| # Promoter dREG bidirectionals | 8437 |
| # Intronic dREG bidirectionals | 10481 |
| # Intergenic dREG bidirectionals | 11633 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |