DBNascent | Samples

SRZ935095 Sample ID 1109

**Data sources**
Paper identifier	Jonkers2014genome
SRP accession	SRP027411
GEO accession	GSE48895
Samples	SRR935095
	SRR935096

**Technical details**
QC score	2
Replicate	2
Protocol	GRO-seq
Library prep	ligation
Spike-in	A. thaliana
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	True
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	94 Mb
Stranded gene read counts	TXT file	924 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	ESC
Clone/Individual	V6.5
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	50
Read depth after trimming	49,317,642
Duplication proportion	0.54689
Proportion reads mapped	0.6825
Exon/intron ratio	2.69351
Unique read proportion	0.51151

**Bidirectionals**
Total # Tfit bidirectionals	38657
# Promoter Tfit bidirectionals	12020
# Intronic Tfit bidirectionals	12431
# Intergenic Tfit bidirectionals	10004
Total # dREG bidirectionals	29930
# Promoter dREG bidirectionals	8718
# Intronic dREG bidirectionals	8841
# Intergenic dREG bidirectionals	9520
Part of Tfit master merge?	True
Part of dREG master merge?	True