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SRZ935097 Sample ID 1110
| Paper identifier | Jonkers2014genome |
| SRP accession | SRP027411 |
| GEO accession | GSE48895 |
| Samples | SRR935097 |
| SRR935098 |
| QC score | 2 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | ligation |
| Spike-in | A. thaliana |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | True |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 111 Mb |
| Stranded gene read counts | TXT file | 926 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 3 Mb |
| dREG bidirectional regions | BED file | 1 Mb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | cell line |
| Cell type | ESC |
| Clone/Individual | V6.5 |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | flavopiridol (300 nM) | -2 min | 0 min | 2 min |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 2 |
| Sample NRO score | 1 |
| Raw read length | 50 |
| Read depth after trimming | 68,558,649 |
| Duplication proportion | 0.60093 |
| Proportion reads mapped | 0.6487 |
| Exon/intron ratio | 2.47365 |
| Unique read proportion | 0.4811 |
| Total # Tfit bidirectionals | 37784 |
| # Promoter Tfit bidirectionals | 10387 |
| # Intronic Tfit bidirectionals | 12611 |
| # Intergenic Tfit bidirectionals | 10931 |
| Total # dREG bidirectionals | 33726 |
| # Promoter dREG bidirectionals | 9012 |
| # Intronic dREG bidirectionals | 10564 |
| # Intergenic dREG bidirectionals | 11354 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |