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SRZ935101 Sample ID 1112
| Paper identifier | Jonkers2014genome |
| SRP | SRP027411 |
| Samples | SRR935101 |
| SRR935102 |
| QC score | 2 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | ligation |
| Spike-in | A. thaliana |
| Single/Paired end | single |
| Timecourse | True |
| Control/Experimental | experimental |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 120 Mb |
| Stranded gene read counts | TXT file | 926 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 3 Mb |
| dREG bidirectional regions | BED file | 1 Mb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | cell line |
| Cell type | ESC |
| Clone/Individual | V6.5 |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | flavopiridol (300 nM) | -5 min | 0 min | 5 min |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 2 |
| Sample NRO score | 1 |
| Raw read length | 50 |
| Read depth after trimming | 60,515,690 |
| Duplication proportion | 0.55312 |
| Proportion reads mapped | 0.7088 |
| Exon/intron ratio | 2.50509 |
| Unique read proportion | 0.54115 |
| Total # Tfit bidirectionals | 30443 |
| # Promoter Tfit bidirectionals | 8053 |
| # Intronic Tfit bidirectionals | 10087 |
| # Intergenic Tfit bidirectionals | 9274 |
| Total # dREG bidirectionals | 35258 |
| # Promoter dREG bidirectionals | 9313 |
| # Intronic dREG bidirectionals | 11341 |
| # Intergenic dREG bidirectionals | 12035 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |