DBNascent | Samples

SRZ935103 Sample ID 1113

**Data sources**
Paper identifier	Jonkers2014genome
SRP	SRP027411
Samples	SRR935103
	SRR935104

**Technical details**
QC score	2
Replicate	2
Protocol	GRO-seq
Library prep	ligation
Spike-in	A. thaliana
Single/Paired end	single
Timecourse	True
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	73 Mb
Stranded gene read counts	TXT file	920 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	ESC
Clone/Individual	V6.5
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	flavopiridol (300 nM)	-5 min	0 min	5 min

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	50
Read depth after trimming	39,740,863
Duplication proportion	0.56312
Proportion reads mapped	0.6698
Exon/intron ratio	2.4648
Unique read proportion	0.47459

**Bidirectionals**
Total # Tfit bidirectionals	21752
# Promoter Tfit bidirectionals	7079
# Intronic Tfit bidirectionals	6929
# Intergenic Tfit bidirectionals	5476
Total # dREG bidirectionals	23724
# Promoter dREG bidirectionals	8714
# Intronic dREG bidirectionals	6756
# Intergenic dREG bidirectionals	6575
Part of Tfit master merge?	True
Part of dREG master merge?	True