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SRZ935105 Sample ID 1114
| Paper identifier | Jonkers2014genome |
| SRP accession | SRP027411 |
| GEO accession | GSE48895 |
| Samples | SRR935105 |
| SRR935106 |
| QC score | 2 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | ligation |
| Spike-in | A. thaliana |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | True |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 104 Mb |
| Stranded gene read counts | TXT file | 924 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 2 Mb |
| dREG bidirectional regions | BED file | 1 Mb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | cell line |
| Cell type | ESC |
| Clone/Individual | V6.5 |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | flavopiridol (300 nM) | -750 s | 0 s | 750 s |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 2 |
| Sample NRO score | 1 |
| Raw read length | 50 |
| Read depth after trimming | 64,109,081 |
| Duplication proportion | 0.61024 |
| Proportion reads mapped | 0.6663 |
| Exon/intron ratio | 2.70831 |
| Unique read proportion | 0.4662 |
| Total # Tfit bidirectionals | 25413 |
| # Promoter Tfit bidirectionals | 6995 |
| # Intronic Tfit bidirectionals | 8410 |
| # Intergenic Tfit bidirectionals | 7554 |
| Total # dREG bidirectionals | 32752 |
| # Promoter dREG bidirectionals | 9137 |
| # Intronic dREG bidirectionals | 10403 |
| # Intergenic dREG bidirectionals | 10952 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |