DBNascent | Samples

SRZ935107 Sample ID 1115

**Data sources**
Paper identifier	Jonkers2014genome
SRP accession	SRP027411
GEO accession	GSE48895
Samples	SRR935107
	SRR935108

**Technical details**
QC score	2
Replicate	2
Protocol	GRO-seq
Library prep	ligation
Spike-in	A. thaliana
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	True
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	91 Mb
Stranded gene read counts	TXT file	922 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	ESC
Clone/Individual	V6.5
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	flavopiridol (300 nM)	-750 s	0 s	750 s

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	50
Read depth after trimming	45,924,110
Duplication proportion	0.52825
Proportion reads mapped	0.6902
Exon/intron ratio	2.5256
Unique read proportion	0.52337

**Bidirectionals**
Total # Tfit bidirectionals	22267
# Promoter Tfit bidirectionals	6694
# Intronic Tfit bidirectionals	7309
# Intergenic Tfit bidirectionals	5992
Total # dREG bidirectionals	27821
# Promoter dREG bidirectionals	8889
# Intronic dREG bidirectionals	8551
# Intergenic dREG bidirectionals	8393
Part of Tfit master merge?	True
Part of dREG master merge?	True