DBNascent | Samples

SRZ935109 Sample ID 1116

**Data sources**
Paper identifier	Jonkers2014genome
SRP accession	SRP027411
GEO accession	GSE48895
Samples	SRR935109
	SRR935110

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	A. thaliana
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	True
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	76 Mb
Stranded gene read counts	TXT file	919 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	ESC
Clone/Individual	V6.5
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	flavopiridol (300 nM)	-25 min	0 min	25 min

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	50
Read depth after trimming	69,344,433
Duplication proportion	0.73576
Proportion reads mapped	0.6255
Exon/intron ratio	3.07381
Unique read proportion	0.32699

**Bidirectionals**
Total # Tfit bidirectionals	26914
# Promoter Tfit bidirectionals	7700
# Intronic Tfit bidirectionals	9311
# Intergenic Tfit bidirectionals	7342
Total # dREG bidirectionals	30416
# Promoter dREG bidirectionals	8511
# Intronic dREG bidirectionals	9860
# Intergenic dREG bidirectionals	9915
Part of Tfit master merge?	True
Part of dREG master merge?	True