DBNascent | Samples

SRZ935111 Sample ID 1117

**Data sources**
Paper identifier	Jonkers2014genome
SRP accession	SRP027411
GEO accession	GSE48895
Samples	SRR935111
	SRR935112

**Technical details**
QC score	3
Replicate	2
Protocol	GRO-seq
Library prep	ligation
Spike-in	A. thaliana
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	True
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	75 Mb
Stranded gene read counts	TXT file	919 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	ESC
Clone/Individual	V6.5
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	flavopiridol (300 nM)	-25 min	0 min	25 min

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	50
Read depth after trimming	63,235,383
Duplication proportion	0.71579
Proportion reads mapped	0.6535
Exon/intron ratio	3.07163
Unique read proportion	0.33633

**Bidirectionals**
Total # Tfit bidirectionals	26277
# Promoter Tfit bidirectionals	8114
# Intronic Tfit bidirectionals	9150
# Intergenic Tfit bidirectionals	6485
Total # dREG bidirectionals	29319
# Promoter dREG bidirectionals	8718
# Intronic dREG bidirectionals	9601
# Intergenic dREG bidirectionals	8989
Part of Tfit master merge?	True
Part of dREG master merge?	True