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SRZ935111 Sample ID 1117
| Paper identifier | Jonkers2014genome |
| SRP accession | SRP027411 |
| GEO accession | GSE48895 |
| Samples | SRR935111 |
| SRR935112 |
| QC score | 3 |
| Replicate | 2 |
| Protocol | GRO-seq |
| Library prep | ligation |
| Spike-in | A. thaliana |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | True |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 75 Mb |
| Stranded gene read counts | TXT file | 919 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 2 Mb |
| dREG bidirectional regions | BED file | 1 Mb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | cell line |
| Cell type | ESC |
| Clone/Individual | V6.5 |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | flavopiridol (300 nM) | -25 min | 0 min | 25 min |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 3 |
| Sample NRO score | 2 |
| Raw read length | 50 |
| Read depth after trimming | 63,235,383 |
| Duplication proportion | 0.71579 |
| Proportion reads mapped | 0.6535 |
| Exon/intron ratio | 3.07163 |
| Unique read proportion | 0.33633 |
| Total # Tfit bidirectionals | 26277 |
| # Promoter Tfit bidirectionals | 8114 |
| # Intronic Tfit bidirectionals | 9150 |
| # Intergenic Tfit bidirectionals | 6485 |
| Total # dREG bidirectionals | 29319 |
| # Promoter dREG bidirectionals | 8718 |
| # Intronic dREG bidirectionals | 9601 |
| # Intergenic dREG bidirectionals | 8989 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |