Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRZ935113 Sample ID 1118
| Paper identifier | Jonkers2014genome |
| SRP accession | SRP027411 |
| GEO accession | GSE48895 |
| Samples | SRR935113 |
| SRR935114 |
| QC score | 4 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | ligation |
| Spike-in | A. thaliana |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | True |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| Tfit bidirectional regions | BED file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | cell line |
| Cell type | ESC |
| Clone/Individual | V6.5 |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | flavopiridol (300 nM) | -50 min | 0 min | 50 min |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 4 |
| Sample NRO score | 2 |
| Raw read length | 50 |
| Read depth after trimming | 78,231,444 |
| Duplication proportion | 0.81194 |
| Proportion reads mapped | 0.62 |
| Exon/intron ratio | 3.4098 |
| Unique read proportion | 0.24128 |
| Total # Tfit bidirectionals | 29161 |
| # Promoter Tfit bidirectionals | 8449 |
| # Intronic Tfit bidirectionals | 10607 |
| # Intergenic Tfit bidirectionals | 7592 |
| Total # dREG bidirectionals | 30981 |
| # Promoter dREG bidirectionals | 8209 |
| # Intronic dREG bidirectionals | 10792 |
| # Intergenic dREG bidirectionals | 9940 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |