DBNascent | Samples

SRZ935115 Sample ID 1119

**Data sources**
Paper identifier	Jonkers2014genome
SRP	SRP027411
Samples	SRR935115
	SRR935116

**Technical details**
QC score	4
Replicate	2
Protocol	GRO-seq
Library prep	ligation
Spike-in	A. thaliana
Single/Paired end	single
Timecourse	True
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	60 Mb
Stranded gene read counts	TXT file	916 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	ESC
Clone/Individual	V6.5
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	flavopiridol (300 nM)	-50 min	0 min	50 min

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	4
Sample NRO score	2
Raw read length	50
Read depth after trimming	71,009,916
Duplication proportion	0.81254
Proportion reads mapped	0.6398
Exon/intron ratio	3.35061
Unique read proportion	0.23739

**Bidirectionals**
Total # Tfit bidirectionals	26579
# Promoter Tfit bidirectionals	8490
# Intronic Tfit bidirectionals	9619
# Intergenic Tfit bidirectionals	6034
Total # dREG bidirectionals	28354
# Promoter dREG bidirectionals	8544
# Intronic dREG bidirectionals	9865
# Intergenic dREG bidirectionals	8044
Part of Tfit master merge?	True
Part of dREG master merge?	True