DBNascent | Samples

SRZ935121 Sample ID 1120

**Data sources**
Paper identifier	Jonkers2014genome
SRP accession	SRP027411
GEO accession	GSE48895
Samples	SRR935121
	SRR935122

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	A. thaliana
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	True
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	53 Mb
Stranded gene read counts	TXT file	912 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	923 Kb
dREG bidirectional regions	BED file	268 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	ESC
Clone/Individual	V6.5
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	triptolide (500 nM)	-25 min	0 min	25 min

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	1
Raw read length	50
Read depth after trimming	55,972,122
Duplication proportion	0.73125
Proportion reads mapped	0.4991
Exon/intron ratio	1.71429
Unique read proportion	0.30148

**Bidirectionals**
Total # Tfit bidirectionals	10793
# Promoter Tfit bidirectionals	3370
# Intronic Tfit bidirectionals	3820
# Intergenic Tfit bidirectionals	1836
Total # dREG bidirectionals	6223
# Promoter dREG bidirectionals	3004
# Intronic dREG bidirectionals	1358
# Intergenic dREG bidirectionals	1281
Part of Tfit master merge?	True
Part of dREG master merge?	True