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SRZ9833431 Sample ID 2590
| Paper identifier | Wan2020h2bg53d |
| SRP accession | SRP216383 |
| GEO accession | GSE134864 |
| Samples | SRR9833431 |
| SRR9833432 |
| QC score | 2 |
| Replicate | 2 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | paired |
| Raw strandedness | read1 reverse |
| Reverse complemented? | False |
| Mapped strandedness | read1 reverse |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 204 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| Tfit bidirectional regions | BED file | 4 Mb |
| dREG bidirectional regions | BED file | 2 Mb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | S2VP10 |
| Clone/Individual | |
| Strain | |
| Genotype | H2B G53D |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | Replicate information not clear |
| Analysis notes |
| Sample QC score | 2 |
| Sample NRO score | 4 |
| Raw read length | 62 |
| Read depth after trimming | 60,131,659 |
| Duplication proportion | 0.38249 |
| Proportion reads mapped | 0.9337 |
| Exon/intron ratio | 8.95424 |
| Unique read proportion | 0.48771 |
| Total # Tfit bidirectionals | 43060 |
| # Promoter Tfit bidirectionals | 16004 |
| # Intronic Tfit bidirectionals | 18854 |
| # Intergenic Tfit bidirectionals | 9434 |
| Total # dREG bidirectionals | 36857 |
| # Promoter dREG bidirectionals | 9063 |
| # Intronic dREG bidirectionals | 17561 |
| # Intergenic dREG bidirectionals | 9078 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |