DBNascent | Samples

SRZ9833431 Sample ID 2590

**Data sources**
Paper identifier	Wan2020h2bg53d
SRP accession	SRP216383
GEO accession	GSE134864
Samples	SRR9833431
	SRR9833432

**Technical details**
QC score	2
Replicate	2
Protocol	PRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	paired
Raw strandedness	read1 reverse
Reverse complemented?	False
Mapped strandedness	read1 reverse
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	204 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	4 Mb
dREG bidirectional regions	BED file	2 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	S2VP10
Clone/Individual
Strain
Genotype	H2B G53D
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	Replicate information not clear
Analysis notes

**Sample metrics**
Sample QC score	2
Sample NRO score	4
Raw read length	62
Read depth after trimming	60,131,659
Duplication proportion	0.38249
Proportion reads mapped	0.9337
Exon/intron ratio	8.95424
Unique read proportion	0.48771

**Bidirectionals**
Total # Tfit bidirectionals	43060
# Promoter Tfit bidirectionals	16004
# Intronic Tfit bidirectionals	18854
# Intergenic Tfit bidirectionals	9434
Total # dREG bidirectionals	36857
# Promoter dREG bidirectionals	9063
# Intronic dREG bidirectionals	17561
# Intergenic dREG bidirectionals	9078
Part of Tfit master merge?	True
Part of dREG master merge?	True