Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRR4423740,SRR4423741
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR4423740 | 37 | Akulenko2018transcriptional | GRO-seq | ligation | experimental | False | 3 | 1 |
| SRR4423741 | 38 | Akulenko2018transcriptional | GRO-seq | ligation | experimental | False | 3 | 1 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR4423740 | D. melanogaster | tissue | ovary | transgenic strain 1.9 | I-element fragment knock-in | ||
| SRR4423741 | D. melanogaster | tissue | ovary | transgenic strain 3.6 | I-element fragment knock-in |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR4423740 | no treatment | None | None | None | |
| SRR4423741 | no treatment | None | None | None |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR4423740 | 125 | 18,269,661 | 0.69697 | 0.7428 | 3.61309 | 0.31634 | 3 | 2 |
| SRR4423741 | 125 | 19,910,331 | 0.78451 | 0.786 | 2.69489 | 0.23345 | 3 | 1 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR4423740 | None | None | None | None | None | None | None | None |
| SRR4423741 | None | None | None | None | None | None | None | None |
Top