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SRR863647,SRR863648,SRR863649,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR863647 | 416 | Cecere2013zfp1 | GRO-seq | ligation | control | True | 4 | 1 |
| SRR863648 | 417 | Cecere2013zfp1 | GRO-seq | ligation | control | True | 4 | 2 |
| SRR863649 | 418 | Cecere2013zfp1 | GRO-seq | ligation | experimental | False | 4 | 1 |
| SRR863650 | 419 | Cecere2013zfp1 | GRO-seq | ligation | experimental | False | 4 | 2 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR863647 | C. elegans | organism | whole worm | stage L3 | N2 | ||
| SRR863648 | C. elegans | organism | whole worm | stage L3 | N2 | ||
| SRR863649 | C. elegans | organism | whole worm | stage L3 | ok554 | zfp1 -/- | |
| SRR863650 | C. elegans | organism | whole worm | stage L3 | ok554 | zfp1 -/- |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR863647 | no treatment | None | None | None | |
| SRR863648 | no treatment | None | None | None | |
| SRR863649 | no treatment | None | None | None | |
| SRR863650 | no treatment | None | None | None |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR863647 | 51 | 9,420,590 | 0.78014 | 0.8513 | 3.49385 | 0.1958 | 4 | 2 |
| SRR863648 | 51 | 6,494,905 | 0.73272 | 0.8632 | 3.67309 | 0.22159 | 4 | 2 |
| SRR863649 | 51 | 7,114,057 | 0.6712 | 0.8416 | 3.12223 | 0.27549 | 4 | 2 |
| SRR863650 | 51 | 5,292,848 | 0.72062 | 0.8497 | 3.86667 | 0.21189 | 4 | 2 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR863647 | None | None | None | None | None | None | None | None |
| SRR863648 | None | None | None | None | None | None | None | None |
| SRR863649 | None | None | None | None | None | None | None | None |
| SRR863650 | None | None | None | None | None | None | None | None |
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