Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRR953377,SRR953378,SRR953379,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR953377 | 420 | Cecere2014global | GRO-seq | ligation | control | True | 3 | 1 |
| SRR953378 | 421 | Cecere2014global | GRO-seq | ligation | control | True | 4 | 2 |
| SRR953379 | 422 | Cecere2014global | GRO-seq | ligation | experimental | False | 3 | 1 |
| SRR953380 | 423 | Cecere2014global | GRO-seq | ligation | experimental | False | 4 | 2 |
| SRR953381 | 424 | Cecere2014global | GRO-seq | ligation | control | True | 3 | 1 |
| SRR953382 | 425 | Cecere2014global | GRO-seq | ligation | control | True | 4 | 2 |
| SRR953383 | 426 | Cecere2014global | GRO-seq | ligation | experimental | False | 4 | 1 |
| SRR953384 | 427 | Cecere2014global | GRO-seq | ligation | experimental | False | 4 | 2 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR953377 | C. elegans | organism | whole worm | stage L3/L4 | N2 | ||
| SRR953378 | C. elegans | organism | whole worm | stage L3/L4 | N2 | ||
| SRR953379 | C. elegans | organism | whole worm | stage L3/L4 | tm892 | csr-1 -/- | |
| SRR953380 | C. elegans | organism | whole worm | stage L3/L4 | tm892 | csr-1 -/- | |
| SRR953381 | C. elegans | organism | whole worm | stage L3/L4 | N2 | ||
| SRR953382 | C. elegans | organism | whole worm | stage L3/L4 | N2 | ||
| SRR953383 | C. elegans | organism | whole worm | stage L3/L4 | ne4253 | drh-3 -/- | |
| SRR953384 | C. elegans | organism | whole worm | stage L3/L4 | ne4253 | drh-3 -/- |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR953377 | no treatment | None | None | None | |
| SRR953378 | no treatment | None | None | None | |
| SRR953379 | no treatment | None | None | None | |
| SRR953380 | no treatment | None | None | None | |
| SRR953381 | no treatment | None | None | None | |
| SRR953382 | no treatment | None | None | None | |
| SRR953383 | no treatment | None | None | None | |
| SRR953384 | no treatment | None | None | None |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR953377 | 51 | 21,568,311 | 0.72654 | 0.765 | 2.81135 | 0.32689 | 3 | 1 |
| SRR953378 | 51 | 43,586,508 | 0.91782 | 0.8403 | 3.65404 | 0.16801 | 4 | 2 |
| SRR953379 | 51 | 41,461,279 | 0.79167 | 0.7197 | 2.87476 | 0.32699 | 3 | 1 |
| SRR953380 | 51 | 33,488,558 | 0.83952 | 0.5719 | 2.95799 | 0.22721 | 4 | 1 |
| SRR953381 | 51 | 28,670,257 | 0.7614 | 0.7994 | 2.75336 | 0.34488 | 3 | 1 |
| SRR953382 | 51 | 62,910,008 | 0.88555 | 0.8539 | 3.21915 | 0.26783 | 4 | 2 |
| SRR953383 | 51 | 20,891,005 | 0.83347 | 0.652 | 2.86441 | 0.20312 | 4 | 1 |
| SRR953384 | 51 | 27,404,785 | 0.83668 | 0.7956 | 3.15559 | 0.23976 | 4 | 2 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR953377 | None | None | None | None | None | None | None | None |
| SRR953378 | None | None | None | None | None | None | None | None |
| SRR953379 | None | None | None | None | None | None | None | None |
| SRR953380 | None | None | None | None | None | None | None | None |
| SRR953381 | None | None | None | None | None | None | None | None |
| SRR953382 | None | None | None | None | None | None | None | None |
| SRR953383 | None | None | None | None | None | None | None | None |
| SRR953384 | None | None | None | None | None | None | None | None |
Top