Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRZ544876,SRR064994,SRZ064988,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRZ544876 | 488 | Core2012defining | GRO-seq | circularization | control | True | 2 | 1 |
| SRR064994 | 483 | Core2012defining | GRO-seq | ligation | control | True | 4 | 1 |
| SRZ064988 | 484 | Core2012defining | GRO-seq | ligation | control | True | 3 | 1 |
| SRZ064990 | 485 | Core2012defining | GRO-seq | ligation | control | False | 3 | 1 |
| SRZ064992 | 486 | Core2012defining | GRO-seq | ligation | experimental | False | 3 | 1 |
| SRZ064995 | 487 | Core2012defining | GRO-seq | ligation | control | True | 5 | 1 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRZ544876 | D. melanogaster | cell line | S2 | ||||
| SRR064994 | D. melanogaster | cell line | S2 | ||||
| SRZ064988 | D. melanogaster | cell line | S2 | ||||
| SRZ064990 | D. melanogaster | cell line | S2 | RNAi control | |||
| SRZ064992 | D. melanogaster | cell line | S2 | RNAi Nelf | |||
| SRZ064995 | D. melanogaster | cell line | S2 |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRZ544876 | no treatment | None | None | None | |
| SRR064994 | no treatment | None | None | None | |
| SRZ064988 | no treatment | None | None | None | |
| SRZ064990 | no treatment | None | None | None | |
| SRZ064992 | no treatment | None | None | None | |
| SRZ064995 | no treatment | None | None | None |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRZ544876 | 39 | 24,301,571 | 0.50399 | 0.6755 | 1.46845 | 0.54619 | 2 | 1 |
| SRR064994 | 43 | 6,025,289 | 0.3906 | 0.7243 | 0.61538 | 0.51529 | 4 | 1 |
| SRZ064988 | 43 | 17,943,871 | 0.55413 | 0.6121 | 2.21576 | 0.45983 | 3 | 1 |
| SRZ064990 | 43 | 16,906,244 | 0.5343 | 0.6207 | 2.16903 | 0.47061 | 3 | 1 |
| SRZ064992 | 43 | 17,124,383 | 0.51116 | 0.5543 | 2.29527 | 0.48038 | 3 | 1 |
| SRZ064995 | 43 | 4,883,220 | 0.35165 | 0.6946 | 1.40066 | 0.54818 | 5 | 1 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRZ544876 | None | None | None | None | None | None | None | None |
| SRR064994 | None | None | None | None | None | None | None | None |
| SRZ064988 | None | None | None | None | None | None | None | None |
| SRZ064990 | None | None | None | None | None | None | None | None |
| SRZ064992 | None | None | None | None | None | None | None | None |
| SRZ064995 | None | None | None | None | None | None | None | None |
Top