DBNascent | Samples

SRR1342250,SRR1342251,SRR1342252,...

**Downloads**
Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

**Technical details**
Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR1342250	886	Gardini2014integrator	GRO-seq	circularization	control	False	3	1
SRR1342251	887	Gardini2014integrator	GRO-seq	circularization	experimental	False	1	1
SRR1342252	888	Gardini2014integrator	GRO-seq	circularization	control	False	4	2
SRR1342253	889	Gardini2014integrator	GRO-seq	circularization	experimental	False	3	2

**Cellular details**
Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR1342250	H. sapiens	cell line	HeLa				dox-inducible shRNA Ints11
SRR1342251	H. sapiens	cell line	HeLa				dox-inducible shRNA Ints11
SRR1342252	H. sapiens	cell line	HeLa				dox-inducible shRNA Ints11
SRR1342253	H. sapiens	cell line	HeLa				dox-inducible shRNA Ints11

**Conditions**
Sample name	Condition type	Treatment	Start time	End time	Duration
SRR1342250	treatment	EGF (100 ng/mL)	-30 min	0 min	30 min
	treatment	serum starvation (0.5% FBS)	-24 hr	0 hr	1 day
SRR1342251	treatment	EGF (100 ng/mL)	-30 min	0 min	30 min
	treatment	doxycycline (1 microg/mL)	-96 hr	0 hr	4 day
	treatment	serum starvation (0.5% FBS)	-24 hr	0 hr	1 day
SRR1342252	treatment	EGF (100 ng/mL)	-30 min	0 min	30 min
	treatment	serum starvation (0.5% FBS)	-24 hr	0 hr	1 day
SRR1342253	treatment	EGF (100 ng/mL)	-30 min	0 min	30 min
	treatment	doxycycline (1 microg/mL)	-96 hr	0 hr	4 day
	treatment	serum starvation (0.5% FBS)	-24 hr	0 hr	1 day

**Sample metrics**
Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR1342250	21	58,090,929	0.71879	0.8107	2.77317	0.56325	3	1
SRR1342251	25	45,226,834	0.39701	0.825	2.97944	0.70464	1	2
SRR1342252	50	113,605,467	0.89132	0.8946	3.85775	0.19659	4	2
SRR1342253	50	71,256,583	0.78388	0.8716	4.08512	0.38079	3	2

**Bidirectionals**
Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR1342250	27316	9364	12436	4820	21710	7574	9762	4314
SRR1342251	48176	14801	20035	12274	31099	8691	14573	7656
SRR1342252	28719	10058	12288	5110	19704	8057	7825	3787
SRR1342253	44019	14569	18326	9971	27014	9124	11298	6547