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SRR23938775,SRR23938776,SRR23938777,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR23938775 | 1094 | Jones2023unpublished | PRO-seq | ligation | experimental | False | 3 | 2 |
| SRR23938776 | 1095 | Jones2023unpublished | PRO-seq | ligation | experimental | False | 3 | 1 |
| SRR23938777 | 1096 | Jones2023unpublished | PRO-seq | ligation | experimental | False | 3 | 2 |
| SRR23938778 | 1097 | Jones2023unpublished | PRO-seq | ligation | experimental | False | 3 | 1 |
| SRR23938779 | 1098 | Jones2023unpublished | PRO-seq | ligation | experimental | False | 2 | 2 |
| SRR23938780 | 1099 | Jones2023unpublished | PRO-seq | ligation | experimental | False | 3 | 1 |
| SRR23938781 | 1100 | Jones2023unpublished | PRO-seq | ligation | control | True | 3 | 2 |
| SRR23938782 | 1101 | Jones2023unpublished | PRO-seq | ligation | control | True | 3 | 1 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR23938775 | H. sapiens | cell line | MCF10A | p53 -/- | |||
| SRR23938776 | H. sapiens | cell line | MCF10A | p53 -/- | |||
| SRR23938777 | H. sapiens | cell line | MCF10A | p53 -/- | |||
| SRR23938778 | H. sapiens | cell line | MCF10A | p53 -/- | |||
| SRR23938779 | H. sapiens | cell line | MCF10A | ||||
| SRR23938780 | H. sapiens | cell line | MCF10A | ||||
| SRR23938781 | H. sapiens | cell line | MCF10A | ||||
| SRR23938782 | H. sapiens | cell line | MCF10A |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR23938775 | treatment | nutlin-3 (10 microM) | -3 hr | 0 hr | 3 hr |
| SRR23938776 | treatment | nutlin-3 (10 microM) | -3 hr | 0 hr | 3 hr |
| SRR23938777 | vehicle | DMSO (0.01%) | -3 hr | 0 hr | 3 hr |
| SRR23938778 | vehicle | DMSO (0.01%) | -3 hr | 0 hr | 3 hr |
| SRR23938779 | treatment | nutlin-3 (10 microM) | -3 hr | 0 hr | 3 hr |
| SRR23938780 | treatment | nutlin-3 (10 microM) | -3 hr | 0 hr | 3 hr |
| SRR23938781 | vehicle | DMSO (0.01%) | -3 hr | 0 hr | 3 hr |
| SRR23938782 | vehicle | DMSO (0.01%) | -3 hr | 0 hr | 3 hr |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR23938775 | 76 | 55,298,143 | 0.70818 | 0.9666 | 4.6968 | 0.45326 | 3 | 2 |
| SRR23938776 | 76 | 54,926,724 | 0.72566 | 0.9512 | 4.54606 | 0.38238 | 3 | 2 |
| SRR23938777 | 76 | 49,329,036 | 0.70146 | 0.9628 | 5.07149 | 0.4378 | 3 | 3 |
| SRR23938778 | 76 | 49,484,140 | 0.7414 | 0.9428 | 4.22569 | 0.45019 | 3 | 2 |
| SRR23938779 | 76 | 52,464,526 | 0.64495 | 0.9611 | 4.58409 | 0.4863 | 2 | 2 |
| SRR23938780 | 76 | 55,093,154 | 0.76947 | 0.9463 | 4.22553 | 0.36739 | 3 | 2 |
| SRR23938781 | 76 | 57,439,504 | 0.71435 | 0.9622 | 4.79133 | 0.43321 | 3 | 2 |
| SRR23938782 | 76 | 57,559,201 | 0.72119 | 0.9419 | 4.50648 | 0.40265 | 3 | 2 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR23938775 | None | None | None | None | None | None | None | None |
| SRR23938776 | None | None | None | None | None | None | None | None |
| SRR23938777 | None | None | None | None | None | None | None | None |
| SRR23938778 | None | None | None | None | None | None | None | None |
| SRR23938779 | None | None | None | None | None | None | None | None |
| SRR23938780 | None | None | None | None | None | None | None | None |
| SRR23938781 | None | None | None | None | None | None | None | None |
| SRR23938782 | None | None | None | None | None | None | None | None |
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