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Downloads

Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
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For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

Technical details

Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR11607564	1127	Judd2021pioneer	PRO-seq	ligation	experimental	False	3	2
SRR11607567	1128	Judd2021pioneer	PRO-seq	ligation	experimental	False	3	2
SRR11607570	1129	Judd2021pioneer	PRO-seq	ligation	experimental	False	3	2
SRR11607573	1130	Judd2021pioneer	PRO-seq	ligation	control	False	3	2
SRR11607576	1131	Judd2021pioneer	PRO-seq	ligation	experimental	False	3	2
SRZ11607565	1132	Judd2021pioneer	PRO-seq	ligation	experimental	False	3	1
SRZ11607568	1133	Judd2021pioneer	PRO-seq	ligation	experimental	False	3	1
SRZ11607571	1134	Judd2021pioneer	PRO-seq	ligation	control	False	3	1
SRZ11607574	1135	Judd2021pioneer	PRO-seq	ligation	experimental	False	3	1
SRZ11607577	1136	Judd2021pioneer	PRO-seq	ligation	experimental	False	3	1

Cellular details

Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR11607564	D. melanogaster	cell line	S2
SRR11607567	D. melanogaster	cell line	S2
SRR11607570	D. melanogaster	cell line	S2
SRR11607573	D. melanogaster	cell line	S2
SRR11607576	D. melanogaster	cell line	S2
SRZ11607565	D. melanogaster	cell line	S2
SRZ11607568	D. melanogaster	cell line	S2
SRZ11607571	D. melanogaster	cell line	S2
SRZ11607574	D. melanogaster	cell line	S2
SRZ11607577	D. melanogaster	cell line	S2

Conditions

Sample name	Condition type	Treatment	Start time	End time	Duration
SRR11607564	treatment	dsRNA Bap170 (10 microg/mL)	-5 day	0 day	5 day
SRR11607567	treatment	dsRNA Nurf301 (10 microg/mL)	-5 day	0 day	5 day
SRR11607570	treatment	dsRNA Bap170 (5 microg/mL)	-5 day	0 day	5 day
	treatment	dsRNA Nurf301 (5 microg/mL)	-5 day	0 day	5 day
SRR11607573	treatment	dsRNA LacZ (10 microg/mL)	-5 day	0 day	5 day
SRR11607576	treatment	dsRNA Gaf (10 microg/mL)	-5 day	0 day	5 day
SRZ11607565	treatment	dsRNA Nurf301 (10 microg/mL)	-5 day	0 day	5 day
SRZ11607568	treatment	dsRNA Bap170 (5 microg/mL)	-5 day	0 day	5 day
	treatment	dsRNA Nurf301 (5 microg/mL)	-5 day	0 day	5 day
SRZ11607571	treatment	dsRNA LacZ (10 microg/mL)	-5 day	0 day	5 day
SRZ11607574	treatment	dsRNA Gaf (10 microg/mL)	-5 day	0 day	5 day
SRZ11607577	treatment	dsRNA Bap170 (10 microg/mL)	-5 day	0 day	5 day

Sample metrics

Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR11607564	42	23,407,618	0.5038	0.4501	2.46881	0.32212	3	1
SRR11607567	42	31,500,431	0.46516	0.303	2.32082	0.33238	3	1
SRR11607570	42	35,116,108	0.5029	0.3829	2.76118	0.34038	3	1
SRR11607573	42	33,665,499	0.54052	0.5044	2.22249	0.30717	3	1
SRR11607576	42	27,400,264	0.51748	0.4847	2.381	0.31548	3	1
SRZ11607565	37	56,489,384	0.53606	0.3254	2.2219	0.3336	3	1
SRZ11607568	37	41,858,473	0.52773	0.4167	2.50258	0.34259	3	1
SRZ11607571	37	37,589,342	0.54702	0.5546	2.21432	0.32764	3	1
SRZ11607574	37	46,181,244	0.53834	0.5178	2.44962	0.34723	3	1
SRZ11607577	37	37,093,081	0.52235	0.5184	2.33393	0.34439	3	1

Bidirectionals

Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR11607564	None	None	None	None	None	None	None	None
SRR11607567	None	None	None	None	None	None	None	None
SRR11607570	None	None	None	None	None	None	None	None
SRR11607573	None	None	None	None	None	None	None	None
SRR11607576	None	None	None	None	None	None	None	None
SRZ11607565	None	None	None	None	None	None	None	None
SRZ11607568	None	None	None	None	None	None	None	None
SRZ11607571	None	None	None	None	None	None	None	None
SRZ11607574	None	None	None	None	None	None	None	None
SRZ11607577	None	None	None	None	None	None	None	None