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SRR7128402,SRR7128403,SRR7128404,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR7128402 | 2031 | Parikh2018critical | GRO-seq | ligation | control | False | 4 | 1 |
| SRR7128403 | 2032 | Parikh2018critical | GRO-seq | ligation | control | False | 3 | 2 |
| SRR7128404 | 2033 | Parikh2018critical | GRO-seq | ligation | experimental | False | 3 | 1 |
| SRR7128405 | 2034 | Parikh2018critical | GRO-seq | ligation | experimental | False | 3 | 2 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR7128402 | D. melanogaster | tissue | ovary | shRNA luciferase | |||
| SRR7128403 | D. melanogaster | tissue | ovary | shRNA luciferase | |||
| SRR7128404 | D. melanogaster | tissue | ovary | shRNA Nup358 | |||
| SRR7128405 | D. melanogaster | tissue | ovary | shRNA Nup358 |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR7128402 | no treatment | None | None | None | |
| SRR7128403 | no treatment | None | None | None | |
| SRR7128404 | no treatment | None | None | None | |
| SRR7128405 | no treatment | None | None | None |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR7128402 | 50 | 22,895,734 | 0.80761 | 0.7684 | 6.9338 | 0.21807 | 4 | 3 |
| SRR7128403 | 50 | 16,357,020 | 0.75265 | 0.8517 | 4.65153 | 0.26457 | 3 | 2 |
| SRR7128404 | 50 | 20,950,442 | 0.73675 | 0.7269 | 5.39221 | 0.28796 | 3 | 3 |
| SRR7128405 | 50 | 25,114,156 | 0.74621 | 0.6755 | 4.86211 | 0.28427 | 3 | 2 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR7128402 | None | None | None | None | None | None | None | None |
| SRR7128403 | None | None | None | None | None | None | None | None |
| SRR7128404 | None | None | None | None | None | None | None | None |
| SRR7128405 | None | None | None | None | None | None | None | None |
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