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SRZ942404,SRZ942407,SRZ942410,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | QC score | Replicate | Outlier? |
| SRZ942404 | 2147 | Saponaro2014recql5 | GRO-seq | not noted in GEO or publication | experimental | 4 | 1 | No |
| SRZ942407 | 2148 | Saponaro2014recql5 | GRO-seq | not noted in GEO or publication | experimental | 4 | 1 | No |
| SRZ942410 | 2149 | Saponaro2014recql5 | GRO-seq | not noted in GEO or publication | experimental | 3 | 1 | No |
| SRZ942413 | 2150 | Saponaro2014recql5 | GRO-seq | not noted in GEO or publication | experimental | 3 | 1 | No |
| SRZ942415 | 2151 | Saponaro2014recql5 | GRO-seq | not noted in GEO or publication | control | 4 | 1 | No |
| SRZ942418 | 2152 | Saponaro2014recql5 | GRO-seq | not noted in GEO or publication | control | 3 | 1 | No |
| SRZ942421 | 2153 | Saponaro2014recql5 | GRO-seq | not noted in GEO or publication | control | 3 | 1 | No |
| SRZ942423 | 2154 | Saponaro2014recql5 | GRO-seq | not noted in GEO or publication | control | 3 | 1 | No |
| SRZ942425 | 2155 | Saponaro2014recql5 | GRO-seq | not noted in GEO or publication | experimental | 4 | 1 | No |
| SRZ942429 | 2156 | Saponaro2014recql5 | GRO-seq | not noted in GEO or publication | experimental | 4 | 1 | No |
| SRZ942433 | 2157 | Saponaro2014recql5 | GRO-seq | not noted in GEO or publication | experimental | 3 | 1 | No |
| SRZ942436 | 2158 | Saponaro2014recql5 | GRO-seq | not noted in GEO or publication | experimental | 3 | 1 | No |
| SRZ942439 | 2159 | Saponaro2014recql5 | GRO-seq | not noted in GEO or publication | control | 4 | 1 | No |
| SRZ942443 | 2160 | Saponaro2014recql5 | GRO-seq | not noted in GEO or publication | control | 4 | 1 | No |
| SRZ942446 | 2161 | Saponaro2014recql5 | GRO-seq | not noted in GEO or publication | control | 3 | 1 | No |
| SRZ942449 | 2162 | Saponaro2014recql5 | GRO-seq | not noted in GEO or publication | control | 3 | 1 | No |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRZ942404 | H. sapiens | cell line | HEK293T | clone 15 | shRNA Recql5 endogenous (stable); dox-inducible Recql5 exogenous (stable) | ||
| SRZ942407 | H. sapiens | cell line | HEK293T | clone 15 | shRNA Recql5 endogenous (stable); dox-inducible Recql5 exogenous (stable) | ||
| SRZ942410 | H. sapiens | cell line | HEK293T | clone 15 | shRNA Recql5 endogenous (stable); dox-inducible Recql5 exogenous (stable) | ||
| SRZ942413 | H. sapiens | cell line | HEK293T | clone 15 | shRNA Recql5 endogenous (stable); dox-inducible Recql5 exogenous (stable) | ||
| SRZ942415 | H. sapiens | cell line | HEK293T | clone 15 | shRNA Recql5 endogenous (stable); dox-inducible Recql5 exogenous (stable) | ||
| SRZ942418 | H. sapiens | cell line | HEK293T | clone 15 | shRNA Recql5 endogenous (stable); dox-inducible Recql5 exogenous (stable) | ||
| SRZ942421 | H. sapiens | cell line | HEK293T | clone 15 | shRNA Recql5 endogenous (stable); dox-inducible Recql5 exogenous (stable) | ||
| SRZ942423 | H. sapiens | cell line | HEK293T | clone 15 | shRNA Recql5 endogenous (stable); dox-inducible Recql5 exogenous (stable) | ||
| SRZ942425 | H. sapiens | cell line | HEK293T | clone 18 | shRNA Recql5 endogenous (stable); dox-inducible Recql5 exogenous (stable) | ||
| SRZ942429 | H. sapiens | cell line | HEK293T | clone 18 | shRNA Recql5 endogenous (stable); dox-inducible Recql5 exogenous (stable) | ||
| SRZ942433 | H. sapiens | cell line | HEK293T | clone 18 | shRNA Recql5 endogenous (stable); dox-inducible Recql5 exogenous (stable) | ||
| SRZ942436 | H. sapiens | cell line | HEK293T | clone 18 | shRNA Recql5 endogenous (stable); dox-inducible Recql5 exogenous (stable) | ||
| SRZ942439 | H. sapiens | cell line | HEK293T | clone 18 | shRNA Recql5 endogenous (stable); dox-inducible Recql5 exogenous (stable) | ||
| SRZ942443 | H. sapiens | cell line | HEK293T | clone 18 | shRNA Recql5 endogenous (stable); dox-inducible Recql5 exogenous (stable) | ||
| SRZ942446 | H. sapiens | cell line | HEK293T | clone 18 | shRNA Recql5 endogenous (stable); dox-inducible Recql5 exogenous (stable) | ||
| SRZ942449 | H. sapiens | cell line | HEK293T | clone 18 | shRNA Recql5 endogenous (stable); dox-inducible Recql5 exogenous (stable) |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRZ942404 | treatment | doxycycline withdrawal | -5970 min | 0 min | 5970 min |
| treatment | DRB (100 microM) | -210 min | 0 min | 210 min | |
| SRZ942407 | treatment | DRB (100 microM) | -220 min | -10 min | 210 min |
| treatment | doxycycline withdrawal | -5980 min | 0 min | 5980 min | |
| SRZ942410 | treatment | DRB (100 microM) | -235 min | -25 min | 210 min |
| treatment | doxycycline withdrawal | -5995 min | 0 min | 5995 min | |
| SRZ942413 | treatment | DRB (100 microM) | -250 min | -40 min | 210 min |
| treatment | doxycycline withdrawal | -6010 min | 0 min | 6010 min | |
| SRZ942415 | treatment | DRB (100 microM) | -210 min | 0 min | 210 min |
| SRZ942418 | treatment | DRB (100 microM) | -220 min | -10 min | 210 min |
| SRZ942421 | treatment | DRB (100 microM) | -235 min | -25 min | 210 min |
| SRZ942423 | treatment | DRB (100 microM) | -250 min | -40 min | 210 min |
| SRZ942425 | treatment | doxycycline withdrawal | -5970 min | 0 min | 5970 min |
| treatment | DRB (100 microM) | -210 min | 0 min | 210 min | |
| SRZ942429 | treatment | DRB (100 microM) | -220 min | -10 min | 210 min |
| treatment | doxycycline withdrawal | -5980 min | 0 min | 5980 min | |
| SRZ942433 | treatment | DRB (100 microM) | -235 min | -25 min | 210 min |
| treatment | doxycycline withdrawal | -5995 min | 0 min | 5995 min | |
| SRZ942436 | treatment | DRB (100 microM) | -250 min | -40 min | 210 min |
| treatment | doxycycline withdrawal | -6010 min | 0 min | 6010 min | |
| SRZ942439 | treatment | DRB (100 microM) | -210 min | 0 min | 210 min |
| SRZ942443 | treatment | DRB (100 microM) | -220 min | -10 min | 210 min |
| SRZ942446 | treatment | DRB (100 microM) | -235 min | -25 min | 210 min |
| SRZ942449 | treatment | DRB (100 microM) | -250 min | -40 min | 210 min |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRZ942404 | 36 | 105,830,290 | 0.85437 | 0.8914 | 6.71522 | 0.19256 | 4 | 3 |
| SRZ942407 | 36 | 93,850,972 | 0.82103 | 0.8793 | 7.14865 | 0.23481 | 4 | 4 |
| SRZ942410 | 36 | 93,712,854 | 0.7523 | 0.8916 | 4.40341 | 0.32079 | 3 | 2 |
| SRZ942413 | 36 | 62,645,354 | 0.72044 | 0.8874 | 3.81641 | 0.3574 | 3 | 2 |
| SRZ942415 | 36 | 91,881,795 | 0.86133 | 0.8652 | 5.03772 | 0.18618 | 4 | 3 |
| SRZ942418 | 36 | 84,208,333 | 0.79762 | 0.883 | 4.89291 | 0.28311 | 3 | 2 |
| SRZ942421 | 36 | 73,439,365 | 0.77243 | 0.8691 | 3.82471 | 0.28903 | 3 | 2 |
| SRZ942423 | 36 | 75,149,264 | 0.68641 | 0.8665 | 3.64865 | 0.40574 | 3 | 3 |
| SRZ942425 | 36 | 101,575,323 | 0.85182 | 0.8704 | 4.06576 | 0.18548 | 4 | 2 |
| SRZ942429 | 36 | 97,442,857 | 0.83145 | 0.8843 | 4.26031 | 0.21101 | 4 | 2 |
| SRZ942433 | 36 | 69,382,590 | 0.74299 | 0.8806 | 3.39501 | 0.29872 | 3 | 2 |
| SRZ942436 | 36 | 70,600,649 | 0.65648 | 0.8645 | 2.88782 | 0.39934 | 3 | 1 |
| SRZ942439 | 36 | 93,694,888 | 0.87169 | 0.8089 | 4.06889 | 0.16695 | 4 | 2 |
| SRZ942443 | 36 | 80,983,893 | 0.81901 | 0.8665 | 4.05378 | 0.23415 | 4 | 2 |
| SRZ942446 | 36 | 78,693,172 | 0.7413 | 0.8537 | 3.3197 | 0.31999 | 3 | 2 |
| SRZ942449 | 36 | 73,882,022 | 0.74963 | 0.8632 | 3.07692 | 0.29927 | 3 | 2 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRZ942404 | 36979 | 3936 | 20644 | 5243 | 21450 | 3277 | 12060 | 3102 |
| SRZ942407 | 39995 | 5868 | 22161 | 4973 | 22887 | 3880 | 12840 | 3317 |
| SRZ942410 | 35821 | 6816 | 19478 | 4949 | 20798 | 5023 | 10110 | 3603 |
| SRZ942413 | 27404 | 5887 | 15485 | 3119 | 14329 | 4409 | 6266 | 2385 |
| SRZ942415 | 39638 | 11226 | 18894 | 4596 | 21668 | 6345 | 9879 | 3005 |
| SRZ942418 | 52417 | 14108 | 26788 | 5558 | 24211 | 6381 | 12060 | 3445 |
| SRZ942421 | 31919 | 9220 | 15640 | 3746 | 15885 | 5482 | 6402 | 2499 |
| SRZ942423 | 26298 | 3466 | 16404 | 3593 | 16051 | 3151 | 8562 | 3039 |
| SRZ942425 | 39465 | 10723 | 19545 | 3837 | 19616 | 5724 | 9355 | 2525 |
| SRZ942429 | 44664 | 12537 | 22274 | 4147 | 22465 | 6069 | 11455 | 2888 |
| SRZ942433 | 29135 | 7401 | 14981 | 3273 | 13998 | 4498 | 6022 | 2250 |
| SRZ942436 | 30435 | 8383 | 15804 | 3730 | 15166 | 5274 | 6183 | 2723 |
| SRZ942439 | 34820 | 10718 | 16240 | 3422 | 17341 | 5757 | 7529 | 2207 |
| SRZ942443 | 45190 | 14184 | 21862 | 4018 | 20370 | 6164 | 9851 | 2653 |
| SRZ942446 | 32801 | 9795 | 15813 | 3879 | 16013 | 5588 | 6316 | 2681 |
| SRZ942449 | 25151 | 8000 | 12330 | 2726 | 13842 | 5683 | 5173 | 2197 |
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