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SRR3004197,SRR3004198,SRR3004199,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR3004197 | 2405 | Sumida2018ultra | EU-seq | ligation | control | False | 5 | 1 |
| SRR3004198 | 2406 | Sumida2018ultra | EU-seq | ligation | control | False | 5 | 2 |
| SRR3004199 | 2407 | Sumida2018ultra | EU-seq | ligation | control | False | 5 | 1 |
| SRR3004200 | 2408 | Sumida2018ultra | EU-seq | ligation | control | False | 4 | 2 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR3004197 | H. sapiens | cell line | HCEC | ||||
| SRR3004198 | H. sapiens | cell line | HCEC | ||||
| SRR3004199 | H. sapiens | cell line | HCT116 | ||||
| SRR3004200 | H. sapiens | cell line | HCT116 |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR3004197 | treatment | ethynyl uridine (200 microM) | -1 hr | 0 hr | 1 hr |
| SRR3004198 | treatment | ethynyl uridine (200 microM) | -1 hr | 0 hr | 1 hr |
| SRR3004199 | treatment | ethynyl uridine (200 microM) | -1 hr | 0 hr | 1 hr |
| SRR3004200 | treatment | ethynyl uridine (200 microM) | -1 hr | 0 hr | 1 hr |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR3004197 | 35 | 4,530,886 | 0.11068 | 0.7858 | 11.3167 | 0.64442 | 5 | 5 |
| SRR3004198 | 35 | 4,753,734 | 0.14655 | 0.7507 | 15.2361 | 0.60021 | 5 | 5 |
| SRR3004199 | 35 | 3,863,330 | 0.13795 | 0.745 | 9.3959 | 0.60667 | 5 | 5 |
| SRR3004200 | 35 | 5,282,934 | 0.10167 | 0.8125 | 4.96505 | 0.73686 | 4 | 2 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR3004197 | 11627 | 1835 | 4642 | 583 | 2941 | 754 | 858 | 381 |
| SRR3004198 | 14074 | 2287 | 5766 | 667 | 3700 | 995 | 1079 | 432 |
| SRR3004199 | 8430 | 1457 | 3640 | 404 | 1756 | 437 | 491 | 253 |
| SRR3004200 | 13350 | 2370 | 6839 | 767 | 2703 | 882 | 952 | 355 |
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