DBNascent is a large catalog of previously published sequencing data that is primarily focused around nascent transcription assays. It currently contains 2888 individual samples derived from 288 individual experiments.

Metadata from publications and from the Gene Expression Omnibus and Short Read Archive databases have been manually curated to describe many aspects of sample types, conditions, and protocols. Samples have then been processed with a standardized pipeline to mapped files, and further analyses have been conducted on human and mouse samples to obtain read locations of bidirectional transcription and read counts over several annotation sets.

Large data, particularly enhancer-gene linkages and other accumulated data are available as Zenodo dataset 14519113.
Sample visualization files and processed data are available to download on our Downloads page or within individual sample or dataset pages (Explore the database).

General database usage:

Using DBNascent