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Paper Details
Link2018analysis
| TDFs (visualization files) | Zip archive | 2.8 Gb |
| Read counts and bidirectional calls | Zip archive | 286 Mb |
| SRP accession | SRP131922 |
| GEO accession | GSE109965 |
| Protocol | GRO-cap, GRO-seq |
| Organisms | M. musculus |
| Library Prep | ligation |
| Spike-in | |
| Published | Yes |
| Year | 2018 |
| First Author | Link |
| Last Author | Glass |
| DOI | 10.1016/j.cell.2018.04.018 |
| Full citation | Verena M. Link, Sascha H. Duttke, Hyun B. Chun, Inge R. Holtman, Emma Westin, Marten A. Hoeksema, Yohei Abe, Dylan Skola, Casey E. Romanoski, Jenhan Tao, Gregory J. Fonseca, Ty D. Troutman, Nathanael J. Spann, Tobias Strid, Mashito Sakai, Miao Yu, Rong Hu, Rongxin Fang, Dirk Metzler, Bing Ren, and Christopher K. Glass. Analysis of genetically diverse macrophages reveals local and domain-wide mechanisms that control transcription factor binding and function. Cell, 173(7):1796 1809.e17, 2018. |
|
Median QC score
|
3.0 |
| ATAC-seq? | Yes |
| RNA-seq? | Yes |
| ChIP-seq? | Yes |
| 3D Seq? | Yes |
| Other Seq? | Yes |