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Sumida2018ultra
| SRR3004197 |
| SRR3004198 |
| SRR3004199 |
| SRR3004200 |
| All metadata | TXT | 6 Kb |
| TDFs (visualization files) | ZIP archive | 142 Mb |
| Read counts and bidirectional calls | ZIP archive | 30 Mb |
| SRP accession | SRP067415 |
| GEO accession | GSE76043 |
| Protocol | EU-seq |
| Organisms | H. sapiens |
| Library Prep | ligation |
| Spike-in | |
| Published | No |
| Year | 2018 |
| First Author | Sumida |
| Last Author | Ohlsson |
| DOI | https://doi.org/10.1101/286583 |
| Full citation | Noriyuki Sumida, Emmanouil Sifakis, Barbara A Scholz, Alejandro Fernandez Woodbridge, Narsis Kiani, David Gomez-Cabrero, J. Peter Svensson, Jesper Tegner, Anita Gondor, and Rolf Ohlsson. The ultra-sensitive nodewalk technique identifies stochastic from virtual, population-based enhancer hubs regulating MYC in 3D: Implications for the fitness of cancer cells. bioRxiv, 2018. |
|
Median QC score
|
5.0 |
| ATAC-seq? | No |
| RNA-seq? | Yes |
| ChIP-seq? | Yes |
| 3D Seq? | No |
| Other Seq? | Yes |