DBNascent | Samples

SRR5227985 Sample ID 1654

**Data sources**
Paper identifier	Liu2017transcriptional
SRP	SRP098814
Samples	SRR5227985

**Technical details**
QC score	1
Replicate	2
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	paired
Timecourse	False
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	270 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	915 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MCF7
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	nocodazole (200 ng/mL)	-12 hr	0 hr	12 hr
treatment	thymidine (2 mM)	-39 hr	-15 hr	1 day

**Extended notes**
Pipeline info and software versions
Sample notes	M phase
Analysis notes

**Sample metrics**
Sample QC score	1
Sample NRO score	1
Raw read length	49
Read depth after trimming	38,060,651
Duplication proportion	0.11265
Proportion reads mapped	0.949
Exon/intron ratio	2.35712
Unique read proportion	0.79107

**Bidirectionals**
Total # Tfit bidirectionals	33316
# Promoter Tfit bidirectionals	10867
# Intronic Tfit bidirectionals	15208
# Intergenic Tfit bidirectionals	5673
Total # dREG bidirectionals	21000
# Promoter dREG bidirectionals	6526
# Intronic dREG bidirectionals	9021
# Intergenic dREG bidirectionals	4432
Part of Tfit master merge?	True
Part of dREG master merge?	True