DBNascent | Samples

SRR836116 Sample ID 953

**Data sources**
Paper identifier	Heinz2013effect
SRP accession	SRP021902
GEO accession	GSE46494
Samples	SRR836116

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	135 Mb
Stranded gene read counts	TXT file	921 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	983 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	peritoneal macrophage
Clone/Individual
Strain	C57BL/6J
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	48
Read depth after trimming	64,240,279
Duplication proportion	0.59046
Proportion reads mapped	0.7412
Exon/intron ratio	3.34877
Unique read proportion	0.61386

**Bidirectionals**
Total # Tfit bidirectionals	24295
# Promoter Tfit bidirectionals	9457
# Intronic Tfit bidirectionals	7307
# Intergenic Tfit bidirectionals	5457
Total # dREG bidirectionals	22639
# Promoter dREG bidirectionals	6243
# Intronic dREG bidirectionals	8255
# Intergenic dREG bidirectionals	5925
Part of Tfit master merge?	True
Part of dREG master merge?	True