DBNascent | Samples

SRR836117 Sample ID 954

**Data sources**
Paper identifier	Heinz2013effect
SRP	SRP021902
Samples	SRR836117

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	110 Mb
Stranded gene read counts	TXT file	918 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	783 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	peritoneal macrophage
Clone/Individual
Strain	C57BL/6J
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	Kdo2-Lipid A (100 ng/mL)	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	1
Raw read length	48
Read depth after trimming	62,664,227
Duplication proportion	0.70879
Proportion reads mapped	0.7434
Exon/intron ratio	2.93723
Unique read proportion	0.57124

**Bidirectionals**
Total # Tfit bidirectionals	20866
# Promoter Tfit bidirectionals	8227
# Intronic Tfit bidirectionals	6604
# Intergenic Tfit bidirectionals	4236
Total # dREG bidirectionals	18010
# Promoter dREG bidirectionals	5513
# Intronic dREG bidirectionals	6713
# Intergenic dREG bidirectionals	3941
Part of Tfit master merge?	True
Part of dREG master merge?	True