DBNascent | Samples

SRR836118 Sample ID 955

**Data sources**
Paper identifier	Heinz2013effect
SRP accession	SRP021902
GEO accession	GSE46494
Samples	SRR836118

**Technical details**
QC score	1
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	172 Mb
Stranded gene read counts	TXT file	925 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	peritoneal macrophage
Clone/Individual
Strain	BALBc/J
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	1
Sample NRO score	1
Raw read length	48
Read depth after trimming	65,335,326
Duplication proportion	0.48961
Proportion reads mapped	0.7615
Exon/intron ratio	2.91416
Unique read proportion	0.73575

**Bidirectionals**
Total # Tfit bidirectionals	29463
# Promoter Tfit bidirectionals	11211
# Intronic Tfit bidirectionals	8450
# Intergenic Tfit bidirectionals	7797
Total # dREG bidirectionals	29366
# Promoter dREG bidirectionals	6787
# Intronic dREG bidirectionals	11661
# Intergenic dREG bidirectionals	8453
Part of Tfit master merge?	True
Part of dREG master merge?	True