DBNascent | Samples

SRZ7349477 Sample ID 1210

**Data sources**
Paper identifier	Kloetgen2020three
SRP accession	SRP150649
GEO accession	GSE115894
Samples	SRR7349477
	SRR7349478

**Technical details**
QC score	3
Replicate	2
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	56 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	697 Kb
dREG bidirectional regions	BED file	178 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	CUTLL1
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	DMSO	-72 hr	0 hr	3 day

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	51
Read depth after trimming	24,278,139
Duplication proportion	0.67563
Proportion reads mapped	0.9653
Exon/intron ratio	4.47723
Unique read proportion	0.36837

**Bidirectionals**
Total # Tfit bidirectionals	8004
# Promoter Tfit bidirectionals	2405
# Intronic Tfit bidirectionals	3837
# Intergenic Tfit bidirectionals	665
Total # dREG bidirectionals	4126
# Promoter dREG bidirectionals	1700
# Intronic dREG bidirectionals	1620
# Intergenic dREG bidirectionals	623
Part of Tfit master merge?	True
Part of dREG master merge?	True