DBNascent | Samples

SRR6216702,SRR6216703,SRR6216704,...

**Downloads**
Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

**Technical details**
Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR6216702	248	Birkenheuer2018herpes	PRO-seq	ligation	experimental	False	1	1
SRR6216703	249	Birkenheuer2018herpes	PRO-seq	ligation	experimental	False	1	2
SRR6216704	250	Birkenheuer2018herpes	PRO-seq	ligation	experimental	False	1	3
SRR6216705	251	Birkenheuer2018herpes	PRO-seq	ligation	control	True	1	1
SRR6216706	252	Birkenheuer2018herpes	PRO-seq	ligation	control	True	1	2
SRR6216707	253	Birkenheuer2018herpes	PRO-seq	ligation	control	True	1	3
SRR6216708	254	Birkenheuer2018herpes	PRO-seq	ligation	experimental	False	1	1
SRR6216709	255	Birkenheuer2018herpes	PRO-seq	ligation	experimental	False	1	2
SRR6216710	256	Birkenheuer2018herpes	PRO-seq	ligation	experimental	False	1	3
SRR6216711	257	Birkenheuer2018herpes	PRO-seq	ligation	control	True	1	1
SRR6216712	258	Birkenheuer2018herpes	PRO-seq	ligation	control	True	1	2
SRR6216713	259	Birkenheuer2018herpes	PRO-seq	ligation	control	True	1	3

**Cellular details**
Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR6216702	H. sapiens	cell line	HEp2
SRR6216703	H. sapiens	cell line	HEp2
SRR6216704	H. sapiens	cell line	HEp2
SRR6216705	H. sapiens	cell line	HEp2
SRR6216706	H. sapiens	cell line	HEp2
SRR6216707	H. sapiens	cell line	HEp2
SRR6216708	H. sapiens	cell line	HEp2
SRR6216709	H. sapiens	cell line	HEp2
SRR6216710	H. sapiens	cell line	HEp2
SRR6216711	H. sapiens	cell line	HEp2
SRR6216712	H. sapiens	cell line	HEp2
SRR6216713	H. sapiens	cell line	HEp2

**Conditions**
Sample name	Condition type	Treatment	Start time	End time	Duration
SRR6216702	treatment	HSV-1 (MOI 5)	-3 hr	0 hr	3 hr
SRR6216703	treatment	HSV-1 (MOI 5)	-3 hr	0 hr	3 hr
SRR6216704	treatment	HSV-1 (MOI 5)	-3 hr	0 hr	3 hr
SRR6216705	vehicle	mock infection medium	-3 hr	0 hr	3 hr
SRR6216706	vehicle	mock infection medium	-3 hr	0 hr	3 hr
SRR6216707	vehicle	mock infection medium	-3 hr	0 hr	3 hr
SRR6216708	treatment	HSV-1 (MOI 5)	-3 hr	0 hr	3 hr
SRR6216709	treatment	HSV-1 (MOI 5)	-3 hr	0 hr	3 hr
SRR6216710	treatment	HSV-1 (MOI 5)	-3 hr	0 hr	3 hr
SRR6216711	vehicle	mock infection medium	-3 hr	0 hr	3 hr
SRR6216712	vehicle	mock infection medium	-3 hr	0 hr	3 hr
SRR6216713	vehicle	mock infection medium	-3 hr	0 hr	3 hr

**Sample metrics**
Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR6216702	76	54,013,225	0.43432	0.9267	4.78192	0.67703	1	2
SRR6216703	76	47,419,825	0.39993	0.9089	4.78924	0.69192	1	2
SRR6216704	76	36,245,372	0.42834	0.896	5.04742	0.63626	1	3
SRR6216705	76	47,310,485	0.42371	0.6383	4.47256	0.63243	1	2
SRR6216706	76	70,380,797	0.45172	0.6182	4.61023	0.64614	1	2
SRR6216707	76	39,889,945	0.49518	0.6379	4.68845	0.54429	1	2
SRR6216708	76	44,178,047	0.48623	0.7345	3.87163	0.56071	1	2
SRR6216709	76	51,489,131	0.46292	0.6652	4.1286	0.61033	1	2
SRR6216710	76	58,104,266	0.43298	0.8038	4.1245	0.64889	1	2
SRR6216711	76	39,469,212	0.46707	0.876	5.09789	0.59908	1	3
SRR6216712	76	53,721,147	0.46885	0.9045	5.24268	0.64128	1	3
SRR6216713	76	45,463,302	0.39945	0.8934	4.7856	0.68498	1	2

**Bidirectionals**
Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR6216702	35087	18541	11714	6007	27034	7939	11557	6201
SRR6216703	34989	18022	11990	6265	27310	8102	11760	6285
SRR6216704	32605	17035	11229	5508	24586	8546	10280	5039
SRR6216705	25804	10559	10491	3822	15847	5978	6156	2801
SRR6216706	28952	10668	11962	4858	18400	5753	7678	3694
SRR6216707	24682	10354	10168	3275	14460	6052	5354	2332
SRR6216708	30384	13040	11892	4935	18254	6549	7172	3476
SRR6216709	20163	7831	8659	3111	12699	5114	4719	2480
SRR6216710	37797	15510	13872	8109	25636	6611	10961	6287
SRR6216711	36719	17980	13217	6552	24725	7740	10548	5293
SRR6216712	39836	18707	14331	7856	28991	7595	12889	7074
SRR6216713	37438	18261	13128	7135	26850	7474	11669	6228