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Downloads

Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
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For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

Technical details

Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRZ2084576	434	Chen2015paf1	GRO-seq	ligation	experimental	False	2	1
SRZ2084580	435	Chen2015paf1	GRO-seq	ligation	experimental	False	1	2
SRZ2084584	436	Chen2015paf1	GRO-seq	ligation	control	False	3	1
SRZ2084588	437	Chen2015paf1	GRO-seq	ligation	control	False	2	2
SRR2084592	430	Chen2015paf1	RNA-seq variant	ligation	experimental	False	1	1
SRR2084593	431	Chen2015paf1	RNA-seq variant	ligation	experimental	False	1	2
SRR2084594	432	Chen2015paf1	RNA-seq variant	ligation	control	False	1	1
SRR2084595	433	Chen2015paf1	RNA-seq variant	ligation	control	False	1	2

Cellular details

Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRZ2084576	H. sapiens	cell line	HCT116				shRNA Paf1
SRZ2084580	H. sapiens	cell line	HCT116				shRNA Paf1
SRZ2084584	H. sapiens	cell line	HCT116				shRNA control
SRZ2084588	H. sapiens	cell line	HCT116				shRNA control
SRR2084592	H. sapiens	cell line	HCT116				shRNA Paf1
SRR2084593	H. sapiens	cell line	HCT116				shRNA Paf1
SRR2084594	H. sapiens	cell line	HCT116				shRNA control
SRR2084595	H. sapiens	cell line	HCT116				shRNA control

Conditions

Sample name	Condition type	Treatment	Start time	End time	Duration
SRZ2084576	no treatment		None	None	None
SRZ2084580	no treatment		None	None	None
SRZ2084584	no treatment		None	None	None
SRZ2084588	no treatment		None	None	None
SRR2084592	no treatment		None	None	None
SRR2084593	no treatment		None	None	None
SRR2084594	no treatment		None	None	None
SRR2084595	no treatment		None	None	None

Sample metrics

Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRZ2084576	35	48,891,005	0.61175	0.3847	3.87908	0.45481	2	2
SRZ2084580	35	80,547,844	0.38707	0.3385	3.23746	0.66933	1	2
SRZ2084584	35	62,965,454	0.67243	0.4716	4.69901	0.38018	3	2
SRZ2084588	35	107,241,990	0.59994	0.4108	3.72339	0.53239	2	2
SRR2084592	51	60,385,567	0.45601	0.9393	5.9645	0.76755	1	3
SRR2084593	51	65,373,285	0.45653	0.94	5.9375	0.78162	1	3
SRR2084594	51	63,992,825	0.48212	0.9307	7.78409	0.75282	1	4
SRR2084595	51	50,717,838	0.47504	0.9294	7.34153	0.73998	1	4

Bidirectionals

Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRZ2084576	20234	7756	8771	3115	12337	6046	3995	2121
SRZ2084580	32086	9483	13498	8543	23989	7336	9756	6460
SRZ2084584	28322	11649	11311	5077	18477	8743	6295	3469
SRZ2084588	33810	11052	14455	7731	24126	8639	9539	5661
SRR2084592	None	None	None	None	None	None	None	None
SRR2084593	None	None	None	None	None	None	None	None
SRR2084594	None	None	None	None	None	None	None	None
SRR2084595	None	None	None	None	None	None	None	None