Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRR3476588,SRR3476589
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR3476588 | 438 | Chen2016cutoff | GRO-seq | random primed | experimental | False | 5 | 1 |
| SRR3476589 | 439 | Chen2016cutoff | GRO-seq | random primed | control | False | 5 | 1 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR3476588 | D. melanogaster | tissue | ovary | P{GAL4::VP16-nos.UTR}CG6325MVD1/P{y[+t7.7] v[+t1.8]=TRiP.GL00054}attP2 | |||
| SRR3476589 | D. melanogaster | tissue | ovary | w[1118]; P{w[+mC]=GAL4::VP16-nos.UTR}CG6325[MVD1] |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR3476588 | no treatment | None | None | None | |
| SRR3476589 | no treatment | None | None | None |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR3476588 | 50 | 51,102,223 | 0.98378 | 0.9439 | 5.52752 | 0.04166 | 5 | 3 |
| SRR3476589 | 50 | 38,387,208 | 0.97294 | 0.9562 | 10.2151 | 0.05184 | 5 | 5 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR3476588 | None | None | None | None | None | None | None | None |
| SRR3476589 | None | None | None | None | None | None | None | None |
Top