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SRR11554696,SRR11554697,SRR11554698,...
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| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR11554696 | 496 | Cosby2021recurrent | PRO-seq | ligation | experimental | False | 4 | 1 |
| SRR11554697 | 497 | Cosby2021recurrent | PRO-seq | ligation | experimental | False | 4 | 2 |
| SRR11554698 | 498 | Cosby2021recurrent | PRO-seq | ligation | experimental | False | 3 | 3 |
| SRR11554699 | 499 | Cosby2021recurrent | PRO-seq | ligation | experimental | False | 4 | 1 |
| SRR11554700 | 500 | Cosby2021recurrent | PRO-seq | ligation | experimental | False | 4 | 2 |
| SRR11554701 | 501 | Cosby2021recurrent | PRO-seq | ligation | experimental | False | 0 | 3 |
| SRR11554702 | 502 | Cosby2021recurrent | PRO-seq | ligation | experimental | False | 4 | 1 |
| SRR11554703 | 503 | Cosby2021recurrent | PRO-seq | ligation | experimental | False | 3 | 2 |
| SRR11554704 | 504 | Cosby2021recurrent | PRO-seq | ligation | experimental | False | 2 | 3 |
| SRR11554705 | 505 | Cosby2021recurrent | PRO-seq | ligation | experimental | False | 4 | 1 |
| SRR11554706 | 506 | Cosby2021recurrent | PRO-seq | ligation | experimental | False | 4 | 2 |
| SRR11554707 | 507 | Cosby2021recurrent | PRO-seq | ligation | experimental | False | 3 | 3 |
| SRR11554708 | 508 | Cosby2021recurrent | PRO-seq | ligation | experimental | False | 3 | 1 |
| SRR11554709 | 509 | Cosby2021recurrent | PRO-seq | ligation | experimental | False | 3 | 2 |
| SRR11554710 | 510 | Cosby2021recurrent | PRO-seq | ligation | experimental | False | 2 | 3 |
| SRR11554711 | 511 | Cosby2021recurrent | PRO-seq | ligation | experimental | False | 4 | 4 |
| SRR11554712 | 512 | Cosby2021recurrent | PRO-seq | ligation | experimental | False | 2 | 5 |
| SRR11554713 | 513 | Cosby2021recurrent | PRO-seq | ligation | experimental | False | 4 | 6 |
| SRR11554714 | 514 | Cosby2021recurrent | PRO-seq | ligation | experimental | False | 4 | 1 |
| SRR11554715 | 515 | Cosby2021recurrent | PRO-seq | ligation | experimental | False | 4 | 2 |
| SRR11554716 | 516 | Cosby2021recurrent | PRO-seq | ligation | experimental | False | 3 | 3 |
| SRR11554717 | 517 | Cosby2021recurrent | PRO-seq | ligation | experimental | False | 5 | 4 |
| SRR11554718 | 518 | Cosby2021recurrent | PRO-seq | ligation | experimental | False | 3 | 5 |
| SRR11554719 | 519 | Cosby2021recurrent | PRO-seq | ligation | experimental | False | 4 | 6 |
| SRR11554720 | 520 | Cosby2021recurrent | PRO-seq | ligation | experimental | False | 5 | 1 |
| SRR11554721 | 521 | Cosby2021recurrent | PRO-seq | ligation | experimental | False | 5 | 2 |
| SRR11554722 | 522 | Cosby2021recurrent | PRO-seq | ligation | control | True | 5 | 1 |
| SRR11554723 | 523 | Cosby2021recurrent | PRO-seq | ligation | control | True | 5 | 2 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR11554696 | M. velifer | cell line | embryonic fibroblast | rescue clone P1D7 | Krabiner endogenous -/-; dox-inducible Krabiner DBD mut exogenous (stable) | ||
| SRR11554697 | M. velifer | cell line | embryonic fibroblast | rescue clone P2B5 | Krabiner endogenous -/-; dox-inducible Krabiner DBD mut exogenous (stable) | ||
| SRR11554698 | M. velifer | cell line | embryonic fibroblast | rescue clone P2B7 | Krabiner endogenous -/-; dox-inducible Krabiner DBD mut exogenous (stable) | ||
| SRR11554699 | M. velifer | cell line | embryonic fibroblast | rescue clone P1D7 | Krabiner endogenous -/-; dox-inducible Krabiner DBD mut exogenous (stable) | ||
| SRR11554700 | M. velifer | cell line | embryonic fibroblast | rescue clone P2B5 | Krabiner endogenous -/-; dox-inducible Krabiner DBD mut exogenous (stable) | ||
| SRR11554701 | M. velifer | cell line | embryonic fibroblast | rescue clone P2B7 | Krabiner endogenous -/-; dox-inducible Krabiner DBD mut exogenous (stable) | ||
| SRR11554702 | M. velifer | cell line | embryonic fibroblast | rescue clone P3A8 | Krabiner endogenous -/-; dox-inducible Krabiner KRAB mut exogenous (stable) | ||
| SRR11554703 | M. velifer | cell line | embryonic fibroblast | rescue clone P4D7 | Krabiner endogenous -/-; dox-inducible Krabiner KRAB mut exogenous (stable) | ||
| SRR11554704 | M. velifer | cell line | embryonic fibroblast | rescue clone P4F4 | Krabiner endogenous -/-; dox-inducible Krabiner KRAB mut exogenous (stable) | ||
| SRR11554705 | M. velifer | cell line | embryonic fibroblast | rescue clone P3A8 | Krabiner endogenous -/-; dox-inducible Krabiner KRAB mut exogenous (stable) | ||
| SRR11554706 | M. velifer | cell line | embryonic fibroblast | rescue clone P4D7 | Krabiner endogenous -/-; dox-inducible Krabiner KRAB mut exogenous (stable) | ||
| SRR11554707 | M. velifer | cell line | embryonic fibroblast | rescue clone P4F4 | Krabiner endogenous -/-; dox-inducible Krabiner KRAB mut exogenous (stable) | ||
| SRR11554708 | M. velifer | cell line | embryonic fibroblast | rescue clone P3E12 | Krabiner endogenous -/-; dox-inducible Krabiner exogenous (stable) | ||
| SRR11554709 | M. velifer | cell line | embryonic fibroblast | rescue clone P4B3 | Krabiner endogenous -/-; dox-inducible Krabiner exogenous (stable) | ||
| SRR11554710 | M. velifer | cell line | embryonic fibroblast | rescue clone P4C11 | Krabiner endogenous -/-; dox-inducible Krabiner exogenous (stable) | ||
| SRR11554711 | M. velifer | cell line | embryonic fibroblast | rescue clone P4C11 | Krabiner endogenous -/-; dox-inducible Krabiner exogenous (stable) | ||
| SRR11554712 | M. velifer | cell line | embryonic fibroblast | rescue clone P4D7 | Krabiner endogenous -/-; dox-inducible Krabiner exogenous (stable) | ||
| SRR11554713 | M. velifer | cell line | embryonic fibroblast | rescue clone P4D7 | Krabiner endogenous -/-; dox-inducible Krabiner exogenous (stable) | ||
| SRR11554714 | M. velifer | cell line | embryonic fibroblast | rescue clone P3E12 | Krabiner endogenous -/-; dox-inducible Krabiner exogenous (stable) | ||
| SRR11554715 | M. velifer | cell line | embryonic fibroblast | rescue clone P4B3 | Krabiner endogenous -/-; dox-inducible Krabiner exogenous (stable) | ||
| SRR11554716 | M. velifer | cell line | embryonic fibroblast | rescue clone P4C11 | Krabiner endogenous -/-; dox-inducible Krabiner exogenous (stable) | ||
| SRR11554717 | M. velifer | cell line | embryonic fibroblast | rescue clone P4C11 | Krabiner endogenous -/-; dox-inducible Krabiner exogenous (stable) | ||
| SRR11554718 | M. velifer | cell line | embryonic fibroblast | rescue clone P4D7 | Krabiner endogenous -/-; dox-inducible Krabiner exogenous (stable) | ||
| SRR11554719 | M. velifer | cell line | embryonic fibroblast | rescue clone P4D7 | Krabiner endogenous -/-; dox-inducible Krabiner exogenous (stable) | ||
| SRR11554720 | M. velifer | cell line | embryonic fibroblast | Krabiner endogenous -/- | |||
| SRR11554721 | M. velifer | cell line | embryonic fibroblast | Krabiner endogenous -/- | |||
| SRR11554722 | M. velifer | cell line | embryonic fibroblast | ||||
| SRR11554723 | M. velifer | cell line | embryonic fibroblast |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR11554696 | no treatment | None | None | None | |
| SRR11554697 | no treatment | None | None | None | |
| SRR11554698 | no treatment | None | None | None | |
| SRR11554699 | treatment | doxycycline (1 microg/mL) | -1 day | 0 day | 1 day |
| SRR11554700 | treatment | doxycycline (1 microg/mL) | -1 day | 0 day | 1 day |
| SRR11554701 | treatment | doxycycline (1 microg/mL) | -1 day | 0 day | 1 day |
| SRR11554702 | no treatment | None | None | None | |
| SRR11554703 | no treatment | None | None | None | |
| SRR11554704 | no treatment | None | None | None | |
| SRR11554705 | treatment | doxycycline (1 microg/mL) | -1 day | 0 day | 1 day |
| SRR11554706 | treatment | doxycycline (1 microg/mL) | -1 day | 0 day | 1 day |
| SRR11554707 | treatment | doxycycline (1 microg/mL) | -1 day | 0 day | 1 day |
| SRR11554708 | no treatment | None | None | None | |
| SRR11554709 | no treatment | None | None | None | |
| SRR11554710 | no treatment | None | None | None | |
| SRR11554711 | no treatment | None | None | None | |
| SRR11554712 | no treatment | None | None | None | |
| SRR11554713 | no treatment | None | None | None | |
| SRR11554714 | treatment | doxycycline (1 microg/mL) | -1 day | 0 day | 1 day |
| SRR11554715 | treatment | doxycycline (1 microg/mL) | -1 day | 0 day | 1 day |
| SRR11554716 | treatment | doxycycline (1 microg/mL) | -1 day | 0 day | 1 day |
| SRR11554717 | treatment | doxycycline (1 microg/mL) | -1 day | 0 day | 1 day |
| SRR11554718 | treatment | doxycycline (1 microg/mL) | -1 day | 0 day | 1 day |
| SRR11554719 | treatment | doxycycline (1 microg/mL) | -1 day | 0 day | 1 day |
| SRR11554720 | no treatment | None | None | None | |
| SRR11554721 | no treatment | None | None | None | |
| SRR11554722 | no treatment | None | None | None | |
| SRR11554723 | no treatment | None | None | None |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR11554696 | 35 | 18,529,494 | 0.53485 | 0.4218 | 3.49231 | 0.40428 | 4 | 2 |
| SRR11554697 | 35 | 18,660,215 | 0.49261 | 0.4187 | 3.89223 | 0.44733 | 4 | 2 |
| SRR11554698 | 35 | 25,851,533 | 0.54823 | 0.407 | 3.72186 | 0.45681 | 3 | 2 |
| SRR11554699 | 35 | 16,250,356 | 0.6316 | 0.4055 | 4.78089 | 0.27986 | 4 | 2 |
| SRR11554700 | 35 | 13,804,544 | 0.57727 | 0.4125 | 5.11507 | 0.30355 | 4 | 3 |
| SRR11554701 | 35 | 15,999,332 | 0.62911 | 0.4024 | 4.91388 | None | 0 | 2 |
| SRR11554702 | 35 | 13,117,366 | 0.54927 | 0.3995 | 4.77778 | 0.31662 | 4 | 2 |
| SRR11554703 | 35 | 21,825,885 | 0.5322 | 0.4176 | 4.62806 | 0.4431 | 3 | 2 |
| SRR11554704 | 35 | 29,347,670 | 0.53991 | 0.4204 | 5.10246 | 0.48466 | 2 | 3 |
| SRR11554705 | 35 | 14,044,352 | 0.53501 | 0.3655 | 5.07302 | 0.32394 | 4 | 3 |
| SRR11554706 | 35 | 18,731,143 | 0.52891 | 0.3732 | 5.40046 | 0.39441 | 4 | 3 |
| SRR11554707 | 35 | 24,936,765 | 0.50922 | 0.3813 | 5.06408 | 0.47171 | 3 | 3 |
| SRR11554708 | 35 | 19,949,375 | 0.47222 | 0.4224 | 4.23744 | 0.48548 | 3 | 2 |
| SRR11554709 | 35 | 26,053,135 | 0.4819 | 0.4087 | 4.69754 | 0.51896 | 3 | 2 |
| SRR11554710 | 35 | 31,535,430 | 0.42901 | 0.413 | 4.17002 | 0.60246 | 2 | 2 |
| SRR11554711 | 35 | 10,054,132 | 0.4902 | 0.4171 | 3.74172 | 0.30841 | 4 | 2 |
| SRR11554712 | 35 | 33,578,918 | 0.52197 | 0.4122 | 4.14004 | 0.53424 | 2 | 2 |
| SRR11554713 | 35 | 11,953,610 | 0.49516 | 0.404 | 4.7044 | 0.34961 | 4 | 2 |
| SRR11554714 | 35 | 15,505,007 | 0.54644 | 0.4138 | 5.72564 | 0.36241 | 4 | 3 |
| SRR11554715 | 35 | 15,706,874 | 0.50088 | 0.3629 | 5.60933 | 0.38148 | 4 | 3 |
| SRR11554716 | 35 | 23,066,226 | 0.44116 | 0.3752 | 4.8079 | 0.52065 | 3 | 2 |
| SRR11554717 | 35 | 8,767,684 | 0.59533 | 0.4121 | 5.07391 | 0.20323 | 5 | 3 |
| SRR11554718 | 35 | 27,647,781 | 0.58945 | 0.3995 | 5.61437 | 0.4214 | 3 | 3 |
| SRR11554719 | 35 | 20,926,840 | 0.48157 | 0.3703 | 4.61614 | 0.4579 | 4 | 2 |
| SRR11554720 | 84 | 29,914,672 | 0.0746 | 0.0004 | 3.0 | 0.0247 | 5 | 2 |
| SRR11554721 | 84 | 34,002,761 | 0.09732 | 0.0006 | 6.0 | 0.02449 | 5 | 3 |
| SRR11554722 | 84 | 36,217,381 | 0.07692 | 0.0004 | 4.0 | 0.02534 | 5 | 2 |
| SRR11554723 | 84 | 36,061,641 | 0.06882 | 0.001 | 5.0 | 0.07126 | 5 | 3 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR11554696 | None | None | None | None | None | None | None | None |
| SRR11554697 | None | None | None | None | None | None | None | None |
| SRR11554698 | None | None | None | None | None | None | None | None |
| SRR11554699 | None | None | None | None | None | None | None | None |
| SRR11554700 | None | None | None | None | None | None | None | None |
| SRR11554701 | None | None | None | None | None | None | None | None |
| SRR11554702 | None | None | None | None | None | None | None | None |
| SRR11554703 | None | None | None | None | None | None | None | None |
| SRR11554704 | None | None | None | None | None | None | None | None |
| SRR11554705 | None | None | None | None | None | None | None | None |
| SRR11554706 | None | None | None | None | None | None | None | None |
| SRR11554707 | None | None | None | None | None | None | None | None |
| SRR11554708 | None | None | None | None | None | None | None | None |
| SRR11554709 | None | None | None | None | None | None | None | None |
| SRR11554710 | None | None | None | None | None | None | None | None |
| SRR11554711 | None | None | None | None | None | None | None | None |
| SRR11554712 | None | None | None | None | None | None | None | None |
| SRR11554713 | None | None | None | None | None | None | None | None |
| SRR11554714 | None | None | None | None | None | None | None | None |
| SRR11554715 | None | None | None | None | None | None | None | None |
| SRR11554716 | None | None | None | None | None | None | None | None |
| SRR11554717 | None | None | None | None | None | None | None | None |
| SRR11554718 | None | None | None | None | None | None | None | None |
| SRR11554719 | None | None | None | None | None | None | None | None |
| SRR11554720 | None | None | None | None | None | None | None | None |
| SRR11554721 | None | None | None | None | None | None | None | None |
| SRR11554722 | None | None | None | None | None | None | None | None |
| SRR11554723 | None | None | None | None | None | None | None | None |
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