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SRR11936615,SRR11936616,SRR11936617,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR11936615 | 538 | Dai2020loop | GRO-seq | ligation | control | False | 1 | 1 |
| SRR11936616 | 539 | Dai2020loop | GRO-seq | ligation | control | False | 1 | 2 |
| SRR11936617 | 540 | Dai2020loop | GRO-seq | ligation | control | False | 1 | 3 |
| SRR11936618 | 541 | Dai2020loop | GRO-seq | ligation | control | False | 1 | 4 |
| SRR11936619 | 542 | Dai2020loop | GRO-seq | ligation | experimental | False | 1 | 1 |
| SRR11936620 | 543 | Dai2020loop | GRO-seq | ligation | experimental | False | 1 | 2 |
| SRR11936621 | 544 | Dai2020loop | GRO-seq | ligation | experimental | False | 1 | 3 |
| SRR11936622 | 545 | Dai2020loop | GRO-seq | ligation | experimental | False | 1 | 4 |
| SRR11936623 | 546 | Dai2020loop | GRO-seq | ligation | control | False | 2 | 1 |
| SRR11936624 | 547 | Dai2020loop | GRO-seq | ligation | control | False | 2 | 2 |
| SRR11936625 | 548 | Dai2020loop | GRO-seq | ligation | control | False | 1 | 3 |
| SRR11936626 | 549 | Dai2020loop | GRO-seq | ligation | experimental | False | 1 | 1 |
| SRR11936627 | 550 | Dai2020loop | GRO-seq | ligation | experimental | False | 1 | 2 |
| SRR11936628 | 551 | Dai2020loop | GRO-seq | ligation | experimental | False | 1 | 3 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR11936615 | M. musculus | primary cell | pro B cell | C57BL/6 | Rag1 -/- | ||
| SRR11936616 | M. musculus | primary cell | pro B cell | C57BL/6 | Rag1 -/- | ||
| SRR11936617 | M. musculus | primary cell | pro B cell | C57BL/6 | Rag1 -/- | ||
| SRR11936618 | M. musculus | primary cell | pro B cell | C57BL/6 | Rag1 -/- | ||
| SRR11936619 | M. musculus | primary cell | pro B cell | C57BL/6 | Rag1 -/-; Igh VH inversion | ||
| SRR11936620 | M. musculus | primary cell | pro B cell | C57BL/6 | Rag1 -/-; Igh VH inversion | ||
| SRR11936621 | M. musculus | primary cell | pro B cell | C57BL/6 | Rag1 -/-; Igh VH inversion | ||
| SRR11936622 | M. musculus | primary cell | pro B cell | C57BL/6 | Rag1 -/-; Igh VH inversion | ||
| SRR11936623 | M. musculus | cell line | v-Abl pro B cell | C57BL/6 | Rag1 -/-; Emu-Bcl2 +; dox-inducible Wapl auxin-inducible degron | ||
| SRR11936624 | M. musculus | cell line | v-Abl pro B cell | C57BL/6 | Rag1 -/-; Emu-Bcl2 +; dox-inducible Wapl auxin-inducible degron | ||
| SRR11936625 | M. musculus | cell line | v-Abl pro B cell | C57BL/6 | Rag1 -/-; Emu-Bcl2 +; dox-inducible Wapl auxin-inducible degron | ||
| SRR11936626 | M. musculus | cell line | v-Abl pro B cell | C57BL/6 | Rag1 -/-; Emu-Bcl2 +; dox-inducible Wapl auxin-inducible degron | ||
| SRR11936627 | M. musculus | cell line | v-Abl pro B cell | C57BL/6 | Rag1 -/-; Emu-Bcl2 +; dox-inducible Wapl auxin-inducible degron | ||
| SRR11936628 | M. musculus | cell line | v-Abl pro B cell | C57BL/6 | Rag1 -/-; Emu-Bcl2 +; dox-inducible Wapl auxin-inducible degron |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR11936615 | vehicle | DMSO | -3 day | 0 day | 3 day |
| treatment | STI-571 (3 microM) | -4 day | 0 day | 4 day | |
| SRR11936616 | vehicle | DMSO | -3 day | 0 day | 3 day |
| treatment | STI-571 (3 microM) | -4 day | 0 day | 4 day | |
| SRR11936617 | vehicle | DMSO | -3 day | 0 day | 3 day |
| treatment | STI-571 (3 microM) | -4 day | 0 day | 4 day | |
| SRR11936618 | vehicle | DMSO | -3 day | 0 day | 3 day |
| treatment | STI-571 (3 microM) | -4 day | 0 day | 4 day | |
| SRR11936619 | vehicle | DMSO | -3 day | 0 day | 3 day |
| treatment | STI-571 (3 microM) | -4 day | 0 day | 4 day | |
| SRR11936620 | vehicle | DMSO | -3 day | 0 day | 3 day |
| treatment | STI-571 (3 microM) | -4 day | 0 day | 4 day | |
| SRR11936621 | vehicle | DMSO | -3 day | 0 day | 3 day |
| treatment | STI-571 (3 microM) | -4 day | 0 day | 4 day | |
| SRR11936622 | vehicle | DMSO | -3 day | 0 day | 3 day |
| treatment | STI-571 (3 microM) | -4 day | 0 day | 4 day | |
| SRR11936623 | vehicle | DMSO | -3 day | 0 day | 3 day |
| treatment | STI-571 (3 microM) | -4 day | 0 day | 4 day | |
| SRR11936624 | vehicle | DMSO | -3 day | 0 day | 3 day |
| treatment | STI-571 (3 microM) | -4 day | 0 day | 4 day | |
| SRR11936625 | vehicle | DMSO | -3 day | 0 day | 3 day |
| treatment | STI-571 (3 microM) | -4 day | 0 day | 4 day | |
| SRR11936626 | treatment | doxycycline (2 mg/mL) | -3 day | 0 day | 3 day |
| treatment | indoleacetic acid (150 microM) | -3 day | 0 day | 3 day | |
| treatment | STI-571 (3 microM) | -4 day | 0 day | 4 day | |
| SRR11936627 | treatment | doxycycline (2 mg/mL) | -3 day | 0 day | 3 day |
| treatment | indoleacetic acid (150 microM) | -3 day | 0 day | 3 day | |
| treatment | STI-571 (3 microM) | -4 day | 0 day | 4 day | |
| SRR11936628 | treatment | doxycycline (2 mg/mL) | -3 day | 0 day | 3 day |
| treatment | indoleacetic acid (150 microM) | -3 day | 0 day | 3 day | |
| treatment | STI-571 (3 microM) | -4 day | 0 day | 4 day |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR11936615 | 76 | 24,799,863 | 0.26449 | 0.7914 | 2.19599 | 0.64779 | 1 | 1 |
| SRR11936616 | 76 | 29,254,255 | 0.263 | 0.7742 | 2.22123 | 0.6803 | 1 | 1 |
| SRR11936617 | 76 | 31,910,118 | 0.26818 | 0.7817 | 2.16141 | 0.69512 | 1 | 1 |
| SRR11936618 | 76 | 31,392,097 | 0.29816 | 0.764 | 2.3141 | 0.64053 | 1 | 1 |
| SRR11936619 | 76 | 29,834,632 | 0.25121 | 0.7926 | 2.16981 | 0.711 | 1 | 1 |
| SRR11936620 | 76 | 28,840,048 | 0.26287 | 0.765 | 2.16237 | 0.67463 | 1 | 1 |
| SRR11936621 | 76 | 24,538,933 | 0.24741 | 0.8049 | 2.14055 | 0.69188 | 1 | 1 |
| SRR11936622 | 76 | 23,116,546 | 0.27487 | 0.783 | 2.14286 | 0.65657 | 1 | 1 |
| SRR11936623 | 76 | 16,710,819 | 0.35391 | 0.8566 | 1.99567 | 0.60097 | 2 | 1 |
| SRR11936624 | 76 | 19,434,181 | 0.31883 | 0.8413 | 1.90216 | 0.63927 | 2 | 1 |
| SRR11936625 | 76 | 23,007,616 | 0.31338 | 0.8515 | 2.07392 | 0.66811 | 1 | 1 |
| SRR11936626 | 76 | 25,338,359 | 0.31023 | 0.8533 | 1.92191 | 0.68633 | 1 | 1 |
| SRR11936627 | 76 | 25,261,446 | 0.3088 | 0.8455 | 1.93201 | 0.6807 | 1 | 1 |
| SRR11936628 | 76 | 34,246,726 | 0.39257 | 0.8439 | 1.90292 | 0.67249 | 1 | 1 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR11936615 | 31931 | 8122 | 13286 | 6381 | 18033 | 4482 | 7044 | 4079 |
| SRR11936616 | 33341 | 8451 | 13897 | 6626 | 19581 | 4639 | 7699 | 4578 |
| SRR11936617 | 33680 | 8336 | 13956 | 6903 | 20514 | 4750 | 8117 | 4948 |
| SRR11936618 | 33482 | 8385 | 14064 | 6537 | 19584 | 4681 | 7613 | 4525 |
| SRR11936619 | 34045 | 8414 | 14148 | 6922 | 20513 | 4778 | 8150 | 4877 |
| SRR11936620 | 33735 | 8359 | 14214 | 6637 | 19552 | 4698 | 7652 | 4513 |
| SRR11936621 | 32314 | 8022 | 13504 | 6449 | 19053 | 4632 | 7521 | 4383 |
| SRR11936622 | 31144 | 7888 | 13207 | 5929 | 17278 | 4432 | 6737 | 3814 |
| SRR11936623 | 29295 | 6791 | 12244 | 6711 | 16994 | 4394 | 5873 | 4809 |
| SRR11936624 | 31583 | 7501 | 13190 | 7173 | 18460 | 4572 | 6415 | 5415 |
| SRR11936625 | 32512 | 7807 | 13192 | 7489 | 19955 | 4752 | 6940 | 5831 |
| SRR11936626 | 35031 | 7758 | 14504 | 8794 | 21503 | 4702 | 7833 | 6711 |
| SRR11936627 | 34424 | 7358 | 14505 | 8624 | 21152 | 4534 | 7765 | 6556 |
| SRR11936628 | 36046 | 7609 | 15183 | 9131 | 23509 | 4754 | 8805 | 7432 |
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