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Downloads

Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
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For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

Technical details

Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR4041365	675	Engreitz2016local	PRO-seq	ligation	control	False	2	1
SRR4041366	676	Engreitz2016local	PRO-seq	ligation	control	False	3	2
SRR4041367	677	Engreitz2016local	PRO-seq	ligation	control	False	2	1
SRR4041368	678	Engreitz2016local	PRO-seq	ligation	experimental	False	2	1
SRR4041369	679	Engreitz2016local	PRO-seq	ligation	experimental	False	3	1
SRR4041370	680	Engreitz2016local	PRO-seq	ligation	experimental	False	1	1
SRR4041371	681	Engreitz2016local	PRO-seq	ligation	experimental	False	2	1
SRR4041372	682	Engreitz2016local	PRO-seq	ligation	experimental	False	2	1
SRR4041373	683	Engreitz2016local	PRO-seq	ligation	experimental	False	3	1

Cellular details

Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR4041365	M. musculus	primary cell	ESC	clone 2	129/SV-Jae x castaneus
SRR4041366	M. musculus	primary cell	ESC	clone 2	129/SV-Jae x castaneus
SRR4041367	M. musculus	primary cell	ESC	clone 1	129/SV-Jae x castaneus
SRR4041368	M. musculus	primary cell	ESC		129/SV-Jae x castaneus	linc1319 TSS +/-
SRR4041369	M. musculus	primary cell	ESC		129/SV-Jae x castaneus	linc1319 promoter +/-
SRR4041370	M. musculus	primary cell	ESC		129/SV-Jae x castaneus	linc1319 +15kb intronic pAS insertion (+/-)
SRR4041371	M. musculus	primary cell	ESC		129/SV-Jae x castaneus	linc1319 +2kb instronic pAS insertion (+/-)
SRR4041372	M. musculus	primary cell	ESC		129/SV-Jae x castaneus	linc1536 promoter +/-
SRR4041373	M. musculus	primary cell	ESC		129/SV-Jae x castaneus	linc1536 intronic pAS insertion (+/-)

Conditions

Sample name	Condition type	Treatment	Start time	End time	Duration
SRR4041365	no treatment		None	None	None
SRR4041366	no treatment		None	None	None
SRR4041367	no treatment		None	None	None
SRR4041368	no treatment		None	None	None
SRR4041369	no treatment		None	None	None
SRR4041370	no treatment		None	None	None
SRR4041371	no treatment		None	None	None
SRR4041372	no treatment		None	None	None
SRR4041373	no treatment		None	None	None

Sample metrics

Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR4041365	40	15,826,487	0.12278	0.8454	3.96541	0.77312	2	2
SRR4041366	40	13,498,684	0.11214	0.8294	4.5738	0.736	3	2
SRR4041367	40	18,107,201	0.15676	0.8038	4.32766	0.70572	2	2
SRR4041368	40	16,159,453	0.14795	0.8102	4.19537	0.68959	2	2
SRR4041369	40	15,860,611	0.43046	0.702	4.23455	0.40593	3	2
SRR4041370	30	26,991,480	0.33888	0.7842	5.06088	0.60057	1	3
SRR4041371	30	19,995,331	0.28527	0.7654	5.49156	0.52651	2	3
SRR4041372	50	22,310,491	0.42377	0.6794	3.76404	0.3874	2	2
SRR4041373	40	13,037,382	0.11847	0.8123	4.27183	0.71765	3	2

Bidirectionals

Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR4041365	36775	11573	10989	10953	20514	6306	5831	5930
SRR4041366	38273	11747	11718	11559	21102	6783	5897	5857
SRR4041367	32432	11417	9381	8758	20143	7096	5595	5211
SRR4041368	37556	12780	10923	10925	22083	7746	6119	6042
SRR4041369	24140	8365	7278	6091	13294	6012	3205	2689
SRR4041370	41252	13480	12325	11937	26159	7848	7841	7588
SRR4041371	41025	14508	12017	11082	23737	7902	6800	6407
SRR4041372	26428	9637	7996	6422	15239	6465	3895	3145
SRR4041373	29903	10159	8712	8371	16964	6672	4432	4029