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SRR065240,SRR065241
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR065240 | 686 | Escoubet-lozach2011mechanisms | GRO-seq | circularization | control | True | 4 | 1 |
| SRR065241 | 687 | Escoubet-lozach2011mechanisms | GRO-seq | circularization | experimental | False | 4 | 1 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR065240 | M. musculus | primary cell | peritoneal macrophage | ||||
| SRR065241 | M. musculus | primary cell | peritoneal macrophage |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR065240 | vehicle | DMSO | -1 hr | 0 hr | 1 hr |
| SRR065241 | treatment | Kdo2-Lipid A | -1 hr | 0 hr | 1 hr |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR065240 | 34 | 8,361,925 | 0.44418 | 0.7592 | 2.73077 | 0.48845 | 4 | 1 |
| SRR065241 | 34 | 8,225,896 | 0.5745 | 0.7059 | 2.82534 | 0.33871 | 4 | 1 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR065240 | 12958 | 5456 | 4013 | 2001 | 9061 | 4665 | 2251 | 1337 |
| SRR065241 | 9894 | 3950 | 3416 | 1511 | 6907 | 3424 | 1951 | 891 |
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