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SRZ5944950,SRZ5944951
Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
ZIP archive | ZIP archive | ZIP archive | ZIP archive |
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. |
Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
SRZ5944950 | 880 | Gao2017thyroid | GRO-seq | circularization | control | True | 4 | 1 |
SRZ5944951 | 881 | Gao2017thyroid | GRO-seq | circularization | experimental | False | 4 | 2 |
Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
SRZ5944950 | H. sapiens | primary cell | CD34+ erythroblast | ||||
SRZ5944951 | H. sapiens | primary cell | CD34+ erythroblast |
Sample name | Condition type | Treatment | Start time | End time | Duration |
SRZ5944950 | vehicle | DMSO | -6 hr | 0 hr | 6 hr |
SRZ5944951 | treatment | GC-1 (1 M) | -6 hr | 0 hr | 6 hr |
Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
SRZ5944950 | 50 | 73,409,312 | 0.86163 | 0.8293 | 3.64671 | 0.17701 | 4 | 2 |
SRZ5944951 | 50 | 50,590,167 | 0.91235 | 0.7686 | 3.49655 | 0.11784 | 4 | 2 |
Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
SRZ5944950 | 7578 | 3780 | 2769 | 301 | 5535 | 3212 | 1703 | 767 |
SRZ5944951 | 4600 | 2343 | 1632 | 167 | 2714 | 1701 | 800 | 373 |