Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRR5835186,SRR5835187,SRR5835188,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR5835186 | 882 | Gao2018jmjd6 | GRO-seq | circularization | control | False | 3 | 1 |
| SRR5835187 | 883 | Gao2018jmjd6 | GRO-seq | circularization | experimental | False | 3 | 1 |
| SRR5835188 | 884 | Gao2018jmjd6 | GRO-seq | circularization | experimental | False | 3 | 1 |
| SRR5835189 | 885 | Gao2018jmjd6 | GRO-seq | circularization | experimental | False | 3 | 1 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR5835186 | H. sapiens | cell line | MCF7 | siRNA control | |||
| SRR5835187 | H. sapiens | cell line | MCF7 | siRNA control | |||
| SRR5835188 | H. sapiens | cell line | MCF7 | siRNA Jmjd6 | |||
| SRR5835189 | H. sapiens | cell line | MCF7 | siRNA Jmjd6 |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR5835186 | no treatment | None | None | None | |
| SRR5835187 | treatment | 17-beta-estradiol (100 nM) | -1 hr | 0 hr | 1 hr |
| SRR5835188 | no treatment | None | None | None | |
| SRR5835189 | treatment | 17-beta-estradiol (100 nM) | -1 hr | 0 hr | 1 hr |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR5835186 | 50 | 27,481,030 | 0.72547 | 0.9506 | 4.13708 | 0.2891 | 3 | 2 |
| SRR5835187 | 50 | 31,343,577 | 0.65412 | 0.9488 | 4.01135 | 0.36987 | 3 | 2 |
| SRR5835188 | 50 | 25,727,151 | 0.70025 | 0.9457 | 4.03612 | 0.31507 | 3 | 2 |
| SRR5835189 | 50 | 26,259,874 | 0.7014 | 0.947 | 4.11816 | 0.31647 | 3 | 2 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR5835186 | 14994 | 7634 | 5516 | 1548 | 10664 | 6462 | 3155 | 1238 |
| SRR5835187 | 14476 | 7016 | 5456 | 1504 | 10011 | 5579 | 3173 | 1297 |
| SRR5835188 | 14842 | 7609 | 5489 | 1553 | 10502 | 6345 | 3134 | 1255 |
| SRR5835189 | 14342 | 7436 | 5269 | 1390 | 10350 | 6246 | 3057 | 1212 |
Top