DBNascent | Samples

SRR3679879,SRR3679880,SRR3679881,...

**Downloads**
Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

**Technical details**
Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR3679879	1082	Johnson2017biotin	GRO-seq	ligation	control	False	2	1
SRR3679880	1083	Johnson2017biotin	GRO-seq	ligation	control	False	1	2
SRR3679881	1084	Johnson2017biotin	GRO-seq	ligation	experimental	False	2	1
SRR3679882	1085	Johnson2017biotin	GRO-seq	ligation	experimental	False	2	2

**Cellular details**
Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR3679879	M. musculus	tissue	cortex		C57BL/6	Mecp2 Tavi-tag
SRR3679880	M. musculus	tissue	cortex		C57BL/6	Mecp2 Tavi-tag
SRR3679881	M. musculus	tissue	cortex		C57BL/6	Mecp2 R106W Tavi-tag
SRR3679882	M. musculus	tissue	cortex		C57BL/6	Mecp2 R106W Tavi-tag

**Conditions**
Sample name	Condition type	Treatment	Start time	End time	Duration
SRR3679879	no treatment		None	None	None
SRR3679880	no treatment		None	None	None
SRR3679881	no treatment		None	None	None
SRR3679882	no treatment		None	None	None

**Sample metrics**
Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR3679879	50	61,690,938	0.5873	0.8726	1.8728	0.71611	2	1
SRR3679880	50	61,120,840	0.47149	0.8604	1.99681	0.75152	1	1
SRR3679881	50	66,980,542	0.57562	0.8614	1.97586	0.72947	2	1
SRR3679882	50	79,392,486	0.51947	0.8577	2.15105	0.75594	2	1

**Bidirectionals**
Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR3679879	27554	9921	9644	5168	26236	9053	10055	4926
SRR3679880	31330	11327	10521	6361	30167	9210	12131	6231
SRR3679881	30494	10847	10417	6144	28476	9114	11130	5818
SRR3679882	37716	12607	12382	9107	34728	8923	14367	8393