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SRR5313794,SRR5313795,SRR5313796,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR5313794 | 1656 | Liu2018arabidopsis | GRO-seq | circularization | experimental | False | 5 | 1 |
| SRR5313795 | 1657 | Liu2018arabidopsis | GRO-seq | circularization | experimental | False | 4 | 2 |
| SRR5313796 | 1658 | Liu2018arabidopsis | GRO-seq | circularization | control | True | 4 | 1 |
| SRR5313797 | 1659 | Liu2018arabidopsis | GRO-seq | circularization | control | True | 4 | 2 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR5313794 | A. thaliana | tissue | seedling | Col-0 | Ago1 mut | ||
| SRR5313795 | A. thaliana | tissue | seedling | Col-0 | Ago1 mut | ||
| SRR5313796 | A. thaliana | tissue | seedling | Col-0 | |||
| SRR5313797 | A. thaliana | tissue | seedling | Col-0 |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR5313794 | no treatment | None | None | None | |
| SRR5313795 | no treatment | None | None | None | |
| SRR5313796 | no treatment | None | None | None | |
| SRR5313797 | no treatment | None | None | None |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR5313794 | 50 | 51,617,923 | 0.9523 | 0.7164 | 2.5 | 0.07736 | 5 | 1 |
| SRR5313795 | 50 | 39,347,251 | 0.94598 | 0.707 | 2.54353 | 0.09196 | 4 | 1 |
| SRR5313796 | 50 | 38,669,048 | 0.93802 | 0.6974 | 2.20979 | 0.10687 | 4 | 1 |
| SRR5313797 | 50 | 39,647,164 | 0.91446 | 0.6717 | 2.09143 | 0.13255 | 4 | 1 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR5313794 | None | None | None | None | None | None | None | None |
| SRR5313795 | None | None | None | None | None | None | None | None |
| SRR5313796 | None | None | None | None | None | None | None | None |
| SRR5313797 | None | None | None | None | None | None | None | None |
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